Experiment: Cobalt chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1411 and Shewana3_1412 are separated by 125 nucleotides Shewana3_1412 and Shewana3_1413 overlap by 4 nucleotides
Shewana3_1411: Shewana3_1411 - hypothetical protein (RefSeq), at 1,632,245 to 1,635,316
_1411
Shewana3_1412: Shewana3_1412 - two component, sigma54 specific, Fis family transcriptional regulator (RefSeq), at 1,635,442 to 1,636,821
_1412
Shewana3_1413: Shewana3_1413 - ATPase domain-containing protein (RefSeq), at 1,636,818 to 1,638,629
_1413
Position (kb)
1635
1636
1637 Strain fitness (log2 ratio)
-2
-1
0
1 at 1634.534 kb on - strand, within Shewana3_1411 at 1634.770 kb on + strand, within Shewana3_1411 at 1634.770 kb on - strand, within Shewana3_1411 at 1635.065 kb on + strand at 1635.119 kb on + strand at 1635.540 kb on + strand at 1635.548 kb on - strand at 1635.772 kb on - strand, within Shewana3_1412 at 1636.232 kb on - strand, within Shewana3_1412 at 1636.331 kb on - strand, within Shewana3_1412 at 1636.386 kb on + strand, within Shewana3_1412 at 1636.483 kb on + strand, within Shewana3_1412 at 1636.819 kb on + strand at 1636.906 kb on - strand at 1636.966 kb on - strand at 1637.072 kb on + strand, within Shewana3_1413 at 1637.244 kb on + strand, within Shewana3_1413 at 1637.468 kb on + strand, within Shewana3_1413 at 1637.529 kb on - strand, within Shewana3_1413 at 1637.585 kb on - strand, within Shewana3_1413 at 1637.713 kb on + strand, within Shewana3_1413 at 1637.774 kb on + strand, within Shewana3_1413
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM remove 1,634,534 - Shewana3_1411 0.75 -0.5 1,634,770 + Shewana3_1411 0.82 -0.6 1,634,770 - Shewana3_1411 0.82 +0.3 1,635,065 + -0.5 1,635,119 + +0.0 1,635,540 + -1.4 1,635,548 - +0.7 1,635,772 - Shewana3_1412 0.24 -0.6 1,636,232 - Shewana3_1412 0.57 -0.1 1,636,331 - Shewana3_1412 0.64 -1.9 1,636,386 + Shewana3_1412 0.68 -1.0 1,636,483 + Shewana3_1412 0.75 -2.3 1,636,819 + -0.1 1,636,906 - -0.7 1,636,966 - -1.6 1,637,072 + Shewana3_1413 0.14 -0.5 1,637,244 + Shewana3_1413 0.24 -1.2 1,637,468 + Shewana3_1413 0.36 -1.6 1,637,529 - Shewana3_1413 0.39 +1.1 1,637,585 - Shewana3_1413 0.42 -1.1 1,637,713 + Shewana3_1413 0.49 +0.7 1,637,774 + Shewana3_1413 0.53 -0.2
Or see this region's nucleotide sequence