Experiment: Cobalt chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0142 and Shewana3_0143 are separated by 459 nucleotides Shewana3_0143 and Shewana3_0144 are separated by 82 nucleotides Shewana3_0144 and Shewana3_0145 are separated by 406 nucleotides
Shewana3_0142: Shewana3_0142 - sodium:dicarboxylate symporter (RefSeq), at 163,107 to 164,336
_0142
Shewana3_0143: Shewana3_0143 - hypothetical protein (RefSeq), at 164,796 to 165,149
_0143
Shewana3_0144: Shewana3_0144 - hypothetical protein (RefSeq), at 165,232 to 166,965
_0144
Shewana3_0145: Shewana3_0145 - OmpA/MotB domain-containing protein (RefSeq), at 167,372 to 168,835
_0145
Position (kb) 165
166
167 Strain fitness (log2 ratio) -2
-1
0
1 at 164.642 kb on + strand at 164.842 kb on + strand, within Shewana3_0143 at 165.003 kb on - strand, within Shewana3_0143 at 165.080 kb on + strand, within Shewana3_0143 at 165.206 kb on + strand at 165.223 kb on + strand at 165.230 kb on - strand at 165.237 kb on - strand at 165.272 kb on - strand at 165.357 kb on + strand at 165.365 kb on - strand at 165.695 kb on + strand, within Shewana3_0144 at 165.703 kb on + strand, within Shewana3_0144 at 165.733 kb on - strand, within Shewana3_0144 at 165.859 kb on + strand, within Shewana3_0144 at 165.867 kb on - strand, within Shewana3_0144 at 165.957 kb on - strand, within Shewana3_0144 at 166.006 kb on + strand, within Shewana3_0144 at 166.011 kb on + strand, within Shewana3_0144 at 166.090 kb on + strand, within Shewana3_0144 at 166.106 kb on - strand, within Shewana3_0144 at 166.112 kb on + strand, within Shewana3_0144 at 166.112 kb on + strand, within Shewana3_0144 at 166.129 kb on + strand, within Shewana3_0144 at 166.161 kb on + strand, within Shewana3_0144 at 166.172 kb on + strand, within Shewana3_0144 at 166.191 kb on + strand, within Shewana3_0144 at 166.520 kb on + strand, within Shewana3_0144 at 166.528 kb on - strand, within Shewana3_0144 at 166.568 kb on - strand, within Shewana3_0144 at 166.589 kb on + strand, within Shewana3_0144 at 166.591 kb on - strand, within Shewana3_0144 at 166.602 kb on - strand, within Shewana3_0144 at 166.637 kb on + strand, within Shewana3_0144 at 166.644 kb on - strand, within Shewana3_0144 at 166.670 kb on + strand, within Shewana3_0144 at 166.731 kb on + strand, within Shewana3_0144 at 166.737 kb on - strand, within Shewana3_0144 at 166.752 kb on + strand, within Shewana3_0144 at 166.752 kb on + strand, within Shewana3_0144 at 166.760 kb on - strand, within Shewana3_0144 at 166.770 kb on - strand, within Shewana3_0144 at 166.770 kb on - strand, within Shewana3_0144 at 166.770 kb on - strand, within Shewana3_0144 at 166.822 kb on + strand at 166.902 kb on + strand at 167.008 kb on - strand at 167.061 kb on - strand at 167.257 kb on + strand at 167.259 kb on + strand at 167.358 kb on - strand at 167.389 kb on + strand at 167.397 kb on - strand at 167.432 kb on - strand at 167.618 kb on + strand, within Shewana3_0145 at 167.620 kb on + strand, within Shewana3_0145 at 167.628 kb on - strand, within Shewana3_0145 at 167.649 kb on + strand, within Shewana3_0145 at 167.683 kb on - strand, within Shewana3_0145 at 167.712 kb on - strand, within Shewana3_0145 at 167.746 kb on + strand, within Shewana3_0145 at 167.773 kb on - strand, within Shewana3_0145
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM remove 164,642 + -0.4 164,842 + Shewana3_0143 0.13 -0.1 165,003 - Shewana3_0143 0.58 +0.5 165,080 + Shewana3_0143 0.80 -0.2 165,206 + +0.0 165,223 + -0.4 165,230 - -0.0 165,237 - -0.0 165,272 - +0.1 165,357 + -0.2 165,365 - -0.1 165,695 + Shewana3_0144 0.27 +0.5 165,703 + Shewana3_0144 0.27 -0.1 165,733 - Shewana3_0144 0.29 -0.4 165,859 + Shewana3_0144 0.36 -0.2 165,867 - Shewana3_0144 0.37 +0.1 165,957 - Shewana3_0144 0.42 -0.1 166,006 + Shewana3_0144 0.45 -0.3 166,011 + Shewana3_0144 0.45 -0.2 166,090 + Shewana3_0144 0.49 -0.1 166,106 - Shewana3_0144 0.50 -0.9 166,112 + Shewana3_0144 0.51 +0.1 166,112 + Shewana3_0144 0.51 -2.2 166,129 + Shewana3_0144 0.52 -0.6 166,161 + Shewana3_0144 0.54 -0.3 166,172 + Shewana3_0144 0.54 -0.4 166,191 + Shewana3_0144 0.55 -0.6 166,520 + Shewana3_0144 0.74 -0.1 166,528 - Shewana3_0144 0.75 -0.9 166,568 - Shewana3_0144 0.77 -0.6 166,589 + Shewana3_0144 0.78 +0.1 166,591 - Shewana3_0144 0.78 -2.0 166,602 - Shewana3_0144 0.79 +0.0 166,637 + Shewana3_0144 0.81 -0.4 166,644 - Shewana3_0144 0.81 +0.0 166,670 + Shewana3_0144 0.83 -0.1 166,731 + Shewana3_0144 0.86 -0.4 166,737 - Shewana3_0144 0.87 +0.1 166,752 + Shewana3_0144 0.88 +0.1 166,752 + Shewana3_0144 0.88 -0.2 166,760 - Shewana3_0144 0.88 +0.0 166,770 - Shewana3_0144 0.89 -0.4 166,770 - Shewana3_0144 0.89 -0.5 166,770 - Shewana3_0144 0.89 -0.8 166,822 + -0.2 166,902 + -2.0 167,008 - -0.8 167,061 - +0.2 167,257 + -0.2 167,259 + -0.0 167,358 - -0.2 167,389 + -0.1 167,397 - +0.1 167,432 - +0.1 167,618 + Shewana3_0145 0.17 -0.0 167,620 + Shewana3_0145 0.17 -0.3 167,628 - Shewana3_0145 0.17 -0.5 167,649 + Shewana3_0145 0.19 -0.2 167,683 - Shewana3_0145 0.21 +0.1 167,712 - Shewana3_0145 0.23 -0.3 167,746 + Shewana3_0145 0.26 +0.0 167,773 - Shewana3_0145 0.27 +0.1
Or see this region's nucleotide sequence