Strain Fitness in Shewanella loihica PV-4 around Shew_3775
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
4,493,223 | - | Shew_3773 | 0.50 | +0.0 | |
4,493,408 | - | Shew_3773 | 0.68 | +0.2 | |
4,493,442 | - | Shew_3773 | 0.71 | -1.1 | |
4,493,590 | + | Shew_3773 | 0.85 | -0.1 | |
4,493,649 | + | -0.1 | |||
4,493,812 | - | Shew_3774 | 0.14 | +0.2 | |
4,493,819 | - | Shew_3774 | 0.17 | +0.2 | |
4,494,028 | - | Shew_3774 | 0.80 | -0.4 | |
4,494,039 | - | Shew_3774 | 0.84 | +0.5 | |
4,494,039 | - | Shew_3774 | 0.84 | +0.1 | |
4,494,182 | + | Shew_3775 | 0.21 | -0.9 | |
4,494,196 | - | Shew_3775 | 0.24 | -0.9 | |
4,494,461 | + | -0.3 | |||
4,494,506 | + | -0.0 | |||
4,494,645 | + | -0.1 | |||
4,495,093 | - | Shew_3776 | 0.24 | -0.5 | |
4,495,215 | + | Shew_3776 | 0.31 | -0.2 | |
4,495,247 | + | Shew_3776 | 0.33 | +0.1 | |
4,495,295 | + | Shew_3776 | 0.35 | -0.1 | |
4,495,331 | - | Shew_3776 | 0.37 | -0.8 | |
4,495,484 | + | Shew_3776 | 0.46 | +0.0 |
Or see this region's nucleotide sequence