Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3689 and Shew_3690 are separated by 23 nucleotides Shew_3690 and Shew_3691 are separated by 151 nucleotides Shew_3691 and coaD are separated by 10 nucleotides coaD and Shew_3693 are separated by 290 nucleotides
Shew_3689: Shew_3689 - hypothetical protein (RefSeq), at 4,393,559 to 4,394,011
_3689
Shew_3690: Shew_3690 - formamidopyrimidine-DNA glycosylase (RefSeq), at 4,394,035 to 4,394,850
_3690
Shew_3691: Shew_3691 - hypothetical protein (RefSeq), at 4,395,002 to 4,396,507
_3691
Shew_3692: coaD - phosphopantetheine adenylyltransferase (RefSeq), at 4,396,518 to 4,396,994
coaD
Shew_3693: Shew_3693 - ADP-heptose--lipooligosaccharide heptosyltransferase III (RefSeq), at 4,397,285 to 4,398,310
_3693
Position (kb)
4395
4396
4397 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4394.133 kb on + strand, within Shew_3690 at 4394.338 kb on + strand, within Shew_3690 at 4394.381 kb on + strand, within Shew_3690 at 4394.766 kb on - strand, within Shew_3690 at 4394.776 kb on - strand at 4394.845 kb on + strand at 4394.846 kb on + strand at 4394.853 kb on - strand at 4394.874 kb on + strand at 4394.896 kb on - strand at 4395.021 kb on - strand at 4395.228 kb on - strand, within Shew_3691 at 4395.362 kb on + strand, within Shew_3691 at 4397.244 kb on - strand at 4397.338 kb on + strand at 4397.346 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,394,133 + Shew_3690 0.12 -0.3 4,394,338 + Shew_3690 0.37 +0.1 4,394,381 + Shew_3690 0.42 -0.6 4,394,766 - Shew_3690 0.90 +0.4 4,394,776 - +0.8 4,394,845 + +0.2 4,394,846 + -0.0 4,394,853 - +0.4 4,394,874 + -0.9 4,394,896 - +0.3 4,395,021 - +1.4 4,395,228 - Shew_3691 0.15 -3.3 4,395,362 + Shew_3691 0.24 -1.5 4,397,244 - +0.3 4,397,338 + +0.4 4,397,346 - +0.0
Or see this region's nucleotide sequence