Strain Fitness in Shewanella loihica PV-4 around Shew_3035
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
3,605,335 | - | Shew_3034 | 0.64 | -0.2 | |
3,605,543 | + | Shew_3034 | 0.77 | -0.2 | |
3,605,923 | - | -0.2 | |||
3,606,006 | - | +0.3 | |||
3,606,078 | + | +0.1 | |||
3,606,086 | - | +0.1 | |||
3,606,086 | - | +0.2 | |||
3,606,088 | + | +0.5 | |||
3,606,170 | - | Shew_3035 | 0.17 | -0.9 | |
3,606,414 | - | -1.1 | |||
3,606,452 | - | -0.6 | |||
3,606,752 | + | Shew_3036 | 0.26 | +0.5 | |
3,606,888 | + | Shew_3036 | 0.42 | +0.2 | |
3,606,888 | + | Shew_3036 | 0.42 | +0.1 | |
3,606,896 | - | Shew_3036 | 0.43 | -0.5 | |
3,607,283 | - | Shew_3036 | 0.90 | +0.4 |
Or see this region's nucleotide sequence