Strain Fitness in Shewanella loihica PV-4 around Shew_3035

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3034 and Shew_3035 are separated by 221 nucleotidesShew_3035 and Shew_3036 are separated by 163 nucleotidesShew_3036 and Shew_3037 overlap by 16 nucleotides Shew_3034: Shew_3034 - diguanylate cyclase (RefSeq), at 3,604,337 to 3,605,905 _3034 Shew_3035: Shew_3035 - hypothetical protein (RefSeq), at 3,606,127 to 3,606,375 _3035 Shew_3036: Shew_3036 - hypothetical protein (RefSeq), at 3,606,539 to 3,607,366 _3036 Shew_3037: Shew_3037 - alpha-L-glutamate ligase (RefSeq), at 3,607,351 to 3,608,304 _3037 Position (kb) 3606 3607Strain fitness (log2 ratio) -1 0 1at 3605.335 kb on - strand, within Shew_3034at 3605.543 kb on + strand, within Shew_3034at 3605.923 kb on - strandat 3606.006 kb on - strandat 3606.078 kb on + strandat 3606.086 kb on - strandat 3606.086 kb on - strandat 3606.088 kb on + strandat 3606.170 kb on - strand, within Shew_3035at 3606.414 kb on - strandat 3606.452 kb on - strandat 3606.752 kb on + strand, within Shew_3036at 3606.888 kb on + strand, within Shew_3036at 3606.888 kb on + strand, within Shew_3036at 3606.896 kb on - strand, within Shew_3036at 3607.283 kb on - strand, within Shew_3036

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,605,335 - Shew_3034 0.64 -0.2
3,605,543 + Shew_3034 0.77 -0.2
3,605,923 - -0.2
3,606,006 - +0.3
3,606,078 + +0.1
3,606,086 - +0.1
3,606,086 - +0.2
3,606,088 + +0.5
3,606,170 - Shew_3035 0.17 -0.9
3,606,414 - -1.1
3,606,452 - -0.6
3,606,752 + Shew_3036 0.26 +0.5
3,606,888 + Shew_3036 0.42 +0.2
3,606,888 + Shew_3036 0.42 +0.1
3,606,896 - Shew_3036 0.43 -0.5
3,607,283 - Shew_3036 0.90 +0.4

Or see this region's nucleotide sequence