Strain Fitness in Shewanella loihica PV-4 around Shew_2816

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2815 and Shew_2816 are separated by 451 nucleotidesShew_2816 and Shew_2817 are separated by 341 nucleotides Shew_2815: Shew_2815 - deoxyribose-phosphate aldolase (RefSeq), at 3,335,827 to 3,336,600 _2815 Shew_2816: Shew_2816 - nucleoside-specific channel-forming protein, Tsx (RefSeq), at 3,337,052 to 3,337,885 _2816 Shew_2817: Shew_2817 - nucleoside transporter (RefSeq), at 3,338,227 to 3,339,486 _2817 Position (kb) 3337 3338Strain fitness (log2 ratio) -2 -1 0 1at 3336.384 kb on - strand, within Shew_2815at 3336.496 kb on - strand, within Shew_2815at 3336.555 kb on - strandat 3336.569 kb on - strandat 3336.600 kb on + strandat 3336.780 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,336,384 - Shew_2815 0.72 -1.1
3,336,496 - Shew_2815 0.86 -1.0
3,336,555 - -2.1
3,336,569 - -1.5
3,336,600 + -2.5
3,336,780 - -0.3

Or see this region's nucleotide sequence