Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2657 and Shew_2658 are separated by 43 nucleotides Shew_2658 and Shew_2659 are separated by 21 nucleotides Shew_2659 and Shew_2660 overlap by 14 nucleotides
Shew_2657: Shew_2657 - hypothetical protein (RefSeq), at 3,130,786 to 3,132,051
_2657
Shew_2658: Shew_2658 - ABC transporter-related protein (RefSeq), at 3,132,095 to 3,132,778
_2658
Shew_2659: Shew_2659 - hypothetical protein (RefSeq), at 3,132,800 to 3,134,065
_2659
Shew_2660: Shew_2660 - hypothetical protein (RefSeq), at 3,134,052 to 3,135,284
_2660
Position (kb) 3132
3133
3134
3135 Strain fitness (log2 ratio) -1
0
1 at 3131.890 kb on + strand, within Shew_2657 at 3131.955 kb on - strand at 3132.008 kb on + strand at 3132.078 kb on + strand at 3132.798 kb on + strand at 3132.833 kb on - strand at 3133.300 kb on - strand, within Shew_2659 at 3134.312 kb on - strand, within Shew_2660 at 3134.505 kb on - strand, within Shew_2660 at 3134.638 kb on - strand, within Shew_2660 at 3135.030 kb on - strand, within Shew_2660
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,131,890 + Shew_2657 0.87 +0.0 3,131,955 - -0.7 3,132,008 + -0.0 3,132,078 + +0.3 3,132,798 + +0.5 3,132,833 - +0.2 3,133,300 - Shew_2659 0.39 -0.2 3,134,312 - Shew_2660 0.21 +0.2 3,134,505 - Shew_2660 0.37 +0.2 3,134,638 - Shew_2660 0.48 +0.8 3,135,030 - Shew_2660 0.79 +0.5
Or see this region's nucleotide sequence