Strain Fitness in Shewanella loihica PV-4 around Shew_2355

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2353 and Shew_2354 are separated by 161 nucleotidesShew_2354 and Shew_2355 are separated by 164 nucleotidesShew_2355 and Shew_2356 are separated by 88 nucleotides Shew_2353: Shew_2353 - magnesium and cobalt transport protein CorA (RefSeq), at 2,747,062 to 2,748,009 _2353 Shew_2354: Shew_2354 - hypothetical protein (RefSeq), at 2,748,171 to 2,748,539 _2354 Shew_2355: Shew_2355 - hypothetical protein (RefSeq), at 2,748,704 to 2,749,474 _2355 Shew_2356: Shew_2356 - patatin (RefSeq), at 2,749,563 to 2,750,600 _2356 Position (kb) 2748 2749 2750Strain fitness (log2 ratio) -1 0 1at 2748.106 kb on + strandat 2748.230 kb on + strand, within Shew_2354at 2748.470 kb on + strand, within Shew_2354at 2748.929 kb on - strand, within Shew_2355at 2749.819 kb on - strand, within Shew_2356at 2750.188 kb on + strand, within Shew_2356

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,748,106 + +0.8
2,748,230 + Shew_2354 0.16 +0.6
2,748,470 + Shew_2354 0.81 +0.6
2,748,929 - Shew_2355 0.29 -0.5
2,749,819 - Shew_2356 0.25 +0.2
2,750,188 + Shew_2356 0.60 +0.5

Or see this region's nucleotide sequence