Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2149 and Shew_2150 are separated by 136 nucleotides Shew_2150 and Shew_2151 are separated by 116 nucleotides Shew_2151 and Shew_2152 are separated by 354 nucleotides Shew_2152 and Shew_2153 are separated by 105 nucleotides
Shew_2149: Shew_2149 - ABC transporter (RefSeq), at 2,495,069 to 2,495,929
_2149
Shew_2150: Shew_2150 - integral membrane protein TerC (RefSeq), at 2,496,066 to 2,496,293
_2150
Shew_2151: Shew_2151 - hypothetical protein (RefSeq), at 2,496,410 to 2,496,787
_2151
Shew_2152: Shew_2152 - hypothetical protein (RefSeq), at 2,497,142 to 2,497,486
_2152
Shew_2153: Shew_2153 - LysR family transcriptional regulator (RefSeq), at 2,497,592 to 2,498,497
_2153
Position (kb)
2496
2497 Strain fitness (log2 ratio)
-1
0
1 at 2495.668 kb on + strand, within Shew_2149 at 2495.776 kb on - strand, within Shew_2149 at 2495.881 kb on - strand at 2496.151 kb on + strand, within Shew_2150 at 2496.197 kb on - strand, within Shew_2150 at 2496.267 kb on - strand, within Shew_2150 at 2496.440 kb on + strand at 2496.440 kb on + strand at 2496.495 kb on - strand, within Shew_2151 at 2497.673 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,495,668 + Shew_2149 0.70 +0.2 2,495,776 - Shew_2149 0.82 +1.1 2,495,881 - -0.7 2,496,151 + Shew_2150 0.37 -0.6 2,496,197 - Shew_2150 0.57 +0.2 2,496,267 - Shew_2150 0.88 +0.1 2,496,440 + +0.1 2,496,440 + -1.2 2,496,495 - Shew_2151 0.22 -0.6 2,497,673 - -0.1
Or see this region's nucleotide sequence