Strain Fitness in Shewanella loihica PV-4 around Shew_2086

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2084 and Shew_2085 are separated by 2 nucleotidesShew_2085 and Shew_2086 overlap by 38 nucleotidesShew_2086 and Shew_2087 overlap by 26 nucleotides Shew_2084: Shew_2084 - gonadoliberin III-related protein (RefSeq), at 2,410,221 to 2,411,726 _2084 Shew_2085: Shew_2085 - alpha-L-glutamate ligase-like protein (RefSeq), at 2,411,729 to 2,412,685 _2085 Shew_2086: Shew_2086 - hypothetical protein (RefSeq), at 2,412,648 to 2,414,423 _2086 Shew_2087: Shew_2087 - hypothetical protein (RefSeq), at 2,414,398 to 2,415,549 _2087 Position (kb) 2412 2413 2414 2415Strain fitness (log2 ratio) -2 -1 0 1at 2412.259 kb on + strand, within Shew_2085at 2412.420 kb on + strand, within Shew_2085at 2414.038 kb on - strand, within Shew_2086at 2414.162 kb on - strand, within Shew_2086at 2414.281 kb on - strandat 2414.332 kb on - strandat 2415.041 kb on - strand, within Shew_2087at 2415.351 kb on - strand, within Shew_2087at 2415.385 kb on + strand, within Shew_2087

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,412,259 + Shew_2085 0.55 -0.5
2,412,420 + Shew_2085 0.72 -0.1
2,414,038 - Shew_2086 0.78 -0.3
2,414,162 - Shew_2086 0.85 -1.9
2,414,281 - -1.2
2,414,332 - -0.1
2,415,041 - Shew_2087 0.56 -1.2
2,415,351 - Shew_2087 0.83 -1.0
2,415,385 + Shew_2087 0.86 -0.9

Or see this region's nucleotide sequence