Strain Fitness in Shewanella loihica PV-4 around Shew_1832

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1831 and Shew_1832 are separated by 8 nucleotidesShew_1832 and Shew_1833 are separated by 47 nucleotides Shew_1831: Shew_1831 - hypothetical protein (RefSeq), at 2,106,265 to 2,107,797 _1831 Shew_1832: Shew_1832 - hypothetical protein (RefSeq), at 2,107,806 to 2,109,074 _1832 Shew_1833: Shew_1833 - putative serine protein kinase, PrkA (RefSeq), at 2,109,122 to 2,111,056 _1833 Position (kb) 2107 2108 2109 2110Strain fitness (log2 ratio) -1 0 1at 2106.811 kb on + strand, within Shew_1831at 2108.498 kb on - strand, within Shew_1832at 2108.777 kb on - strand, within Shew_1832at 2109.350 kb on - strand, within Shew_1833at 2109.647 kb on - strand, within Shew_1833

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,106,811 + Shew_1831 0.36 +0.5
2,108,498 - Shew_1832 0.55 -1.1
2,108,777 - Shew_1832 0.77 +0.0
2,109,350 - Shew_1833 0.12 -0.0
2,109,647 - Shew_1833 0.27 +0.3

Or see this region's nucleotide sequence