Strain Fitness in Shewanella loihica PV-4 around Shew_1667

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1666 and Shew_1667 are separated by 388 nucleotidesShew_1667 and Shew_1668 are separated by 135 nucleotides Shew_1666: Shew_1666 - putative esterase (RefSeq), at 1,914,214 to 1,915,551 _1666 Shew_1667: Shew_1667 - acetyl-CoA acetyltransferase (RefSeq), at 1,915,940 to 1,917,130 _1667 Shew_1668: Shew_1668 - methylmalonate-semialdehyde dehydrogenase (RefSeq), at 1,917,266 to 1,918,771 _1668 Position (kb) 1915 1916 1917 1918Strain fitness (log2 ratio) -1 0 1 2at 1915.178 kb on + strand, within Shew_1666at 1915.259 kb on + strand, within Shew_1666at 1915.267 kb on - strand, within Shew_1666at 1915.343 kb on - strand, within Shew_1666at 1915.947 kb on - strandat 1916.148 kb on - strand, within Shew_1667at 1916.260 kb on + strand, within Shew_1667at 1916.487 kb on + strand, within Shew_1667at 1917.582 kb on + strand, within Shew_1668at 1917.582 kb on + strand, within Shew_1668at 1917.692 kb on - strand, within Shew_1668at 1917.702 kb on + strand, within Shew_1668at 1917.779 kb on + strand, within Shew_1668at 1917.917 kb on - strand, within Shew_1668at 1918.118 kb on - strand, within Shew_1668

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,915,178 + Shew_1666 0.72 -0.6
1,915,259 + Shew_1666 0.78 -1.0
1,915,267 - Shew_1666 0.79 +0.0
1,915,343 - Shew_1666 0.84 +1.8
1,915,947 - +0.6
1,916,148 - Shew_1667 0.17 -0.1
1,916,260 + Shew_1667 0.27 -1.3
1,916,487 + Shew_1667 0.46 -0.4
1,917,582 + Shew_1668 0.21 +0.2
1,917,582 + Shew_1668 0.21 +0.2
1,917,692 - Shew_1668 0.28 -1.2
1,917,702 + Shew_1668 0.29 -0.0
1,917,779 + Shew_1668 0.34 +0.6
1,917,917 - Shew_1668 0.43 +0.3
1,918,118 - Shew_1668 0.57 +0.3

Or see this region's nucleotide sequence