Strain Fitness in Shewanella loihica PV-4 around Shew_1555

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1553 and Shew_1554 are separated by 135 nucleotidesShew_1554 and Shew_1555 are separated by 262 nucleotidesShew_1555 and Shew_1556 are separated by 256 nucleotidesShew_1556 and Shew_1557 are separated by 187 nucleotides Shew_1553: Shew_1553 - hypothetical protein (RefSeq), at 1,784,052 to 1,784,534 _1553 Shew_1554: Shew_1554 - hypothetical protein (RefSeq), at 1,784,670 to 1,785,014 _1554 Shew_1555: Shew_1555 - Glu/Leu/Phe/Val dehydrogenase, dimerisation region (RefSeq), at 1,785,277 to 1,786,308 _1555 Shew_1556: Shew_1556 - hypothetical protein (RefSeq), at 1,786,565 to 1,787,014 _1556 Shew_1557: Shew_1557 - cupin 4 family protein (RefSeq), at 1,787,202 to 1,788,362 _1557 Position (kb) 1785 1786 1787Strain fitness (log2 ratio) -1 0 1at 1784.701 kb on - strandat 1784.870 kb on + strand, within Shew_1554at 1785.040 kb on - strandat 1785.184 kb on - strandat 1785.801 kb on + strand, within Shew_1555at 1785.966 kb on - strand, within Shew_1555at 1787.287 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,784,701 - -0.4
1,784,870 + Shew_1554 0.58 -0.1
1,785,040 - +0.4
1,785,184 - +0.0
1,785,801 + Shew_1555 0.51 -1.1
1,785,966 - Shew_1555 0.67 -1.1
1,787,287 - -0.6

Or see this region's nucleotide sequence