Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1492 and Shew_1493 are separated by 169 nucleotides Shew_1493 and Shew_1494 are separated by 124 nucleotides Shew_1494 and Shew_1495 are separated by 92 nucleotides Shew_1495 and Shew_1496 are separated by 15 nucleotides
Shew_1492: Shew_1492 - MATE efflux family protein (RefSeq), at 1,715,681 to 1,717,168
_1492
Shew_1493: Shew_1493 - hypothetical protein (RefSeq), at 1,717,338 to 1,717,607
_1493
Shew_1494: Shew_1494 - hypothetical protein (RefSeq), at 1,717,732 to 1,718,055
_1494
Shew_1495: Shew_1495 - hypothetical protein (RefSeq), at 1,718,148 to 1,718,813
_1495
Shew_1496: Shew_1496 - putative lipoprotein (RefSeq), at 1,718,829 to 1,719,362
_1496
Position (kb) 1717
1718
1719 Strain fitness (log2 ratio) -1
0
1 at 1716.814 kb on + strand, within Shew_1492 at 1717.020 kb on + strand at 1717.062 kb on + strand at 1717.096 kb on + strand at 1717.197 kb on - strand at 1717.694 kb on - strand at 1717.983 kb on + strand, within Shew_1494 at 1717.991 kb on - strand, within Shew_1494 at 1718.361 kb on - strand, within Shew_1495 at 1718.564 kb on - strand, within Shew_1495 at 1718.697 kb on - strand, within Shew_1495 at 1718.932 kb on - strand, within Shew_1496 at 1718.976 kb on + strand, within Shew_1496 at 1718.988 kb on - strand, within Shew_1496 at 1719.011 kb on - strand, within Shew_1496
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,716,814 + Shew_1492 0.76 -0.3 1,717,020 + -0.1 1,717,062 + -1.7 1,717,096 + -0.7 1,717,197 - -0.2 1,717,694 - +0.3 1,717,983 + Shew_1494 0.77 -0.6 1,717,991 - Shew_1494 0.80 -1.3 1,718,361 - Shew_1495 0.32 -0.5 1,718,564 - Shew_1495 0.62 -0.1 1,718,697 - Shew_1495 0.82 +0.1 1,718,932 - Shew_1496 0.19 -0.1 1,718,976 + Shew_1496 0.28 +0.1 1,718,988 - Shew_1496 0.30 +0.1 1,719,011 - Shew_1496 0.34 +0.3
Or see this region's nucleotide sequence