Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1272 and Shew_1273 are separated by 83 nucleotides Shew_1273 and Shew_1274 are separated by 14 nucleotides
Shew_1272: Shew_1272 - uroporphyrin-III C/tetrapyrrole methyltransferase (RefSeq), at 1,470,059 to 1,470,868
_1272
Shew_1273: Shew_1273 - hypothetical protein (RefSeq), at 1,470,952 to 1,471,173
_1273
Shew_1274: Shew_1274 - diguanylate cyclase (RefSeq), at 1,471,188 to 1,472,969
_1274
Position (kb)
1471
1472
1473 Strain fitness (log2 ratio)
-1
0
1 at 1470.293 kb on - strand, within Shew_1272 at 1470.642 kb on + strand, within Shew_1272 at 1470.890 kb on + strand at 1471.114 kb on + strand, within Shew_1273 at 1471.378 kb on + strand, within Shew_1274 at 1471.446 kb on - strand, within Shew_1274 at 1471.862 kb on + strand, within Shew_1274 at 1471.945 kb on - strand, within Shew_1274 at 1472.164 kb on + strand, within Shew_1274 at 1472.279 kb on + strand, within Shew_1274 at 1472.287 kb on - strand, within Shew_1274 at 1472.480 kb on - strand, within Shew_1274 at 1472.855 kb on - strand at 1472.892 kb on + strand at 1472.893 kb on - strand at 1473.022 kb on - strand at 1473.217 kb on + strand at 1473.305 kb on + strand at 1473.327 kb on + strand at 1473.335 kb on - strand at 1473.402 kb on + strand at 1473.410 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,470,293 - Shew_1272 0.29 -0.0 1,470,642 + Shew_1272 0.72 +0.0 1,470,890 + +0.5 1,471,114 + Shew_1273 0.73 +0.1 1,471,378 + Shew_1274 0.11 -0.9 1,471,446 - Shew_1274 0.14 -0.3 1,471,862 + Shew_1274 0.38 -0.5 1,471,945 - Shew_1274 0.42 +0.2 1,472,164 + Shew_1274 0.55 -0.5 1,472,279 + Shew_1274 0.61 -0.5 1,472,287 - Shew_1274 0.62 +0.3 1,472,480 - Shew_1274 0.73 -1.0 1,472,855 - -0.4 1,472,892 + +0.4 1,472,893 - +0.2 1,473,022 - +0.8 1,473,217 + -0.5 1,473,305 + +0.8 1,473,327 + +1.6 1,473,335 - -0.2 1,473,402 + +0.2 1,473,410 - +0.2
Or see this region's nucleotide sequence