Strain Fitness in Shewanella loihica PV-4 around Shew_0995

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0994 and Shew_0995 are separated by 509 nucleotidesShew_0995 and Shew_R0023 are separated by 158 nucleotidesShew_R0023 and Shew_0996 are separated by 275 nucleotides Shew_0994: Shew_0994 - KfrAs (RefSeq), at 1,150,865 to 1,151,482 _0994 Shew_0995: Shew_0995 - phage integrase family protein (RefSeq), at 1,151,992 to 1,152,966 _0995 Shew_R0023: Shew_R0023 - tRNA-Met (RefSeq), at 1,153,125 to 1,153,201 _R0023 Shew_0996: Shew_0996 - RpoD family RNA polymerase sigma factor (RefSeq), at 1,153,477 to 1,155,327 _0996 Position (kb) 1151 1152 1153Strain fitness (log2 ratio) -1 0 1at 1151.010 kb on + strand, within Shew_0994at 1151.134 kb on + strand, within Shew_0994at 1151.134 kb on + strand, within Shew_0994at 1151.386 kb on + strand, within Shew_0994at 1151.630 kb on - strandat 1152.439 kb on - strand, within Shew_0995at 1152.440 kb on + strand, within Shew_0995at 1152.462 kb on - strand, within Shew_0995at 1152.518 kb on - strand, within Shew_0995at 1153.071 kb on - strandat 1153.081 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,151,010 + Shew_0994 0.23 +0.4
1,151,134 + Shew_0994 0.44 +0.8
1,151,134 + Shew_0994 0.44 +1.2
1,151,386 + Shew_0994 0.84 +0.9
1,151,630 - +0.1
1,152,439 - Shew_0995 0.46 -0.3
1,152,440 + Shew_0995 0.46 -0.6
1,152,462 - Shew_0995 0.48 -0.2
1,152,518 - Shew_0995 0.54 -1.4
1,153,071 - +0.4
1,153,081 - -0.9

Or see this region's nucleotide sequence