Strain Fitness in Shewanella loihica PV-4 around Shew_0767

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0766 and Shew_0767 are separated by 229 nucleotidesShew_0767 and Shew_0768 are separated by 50 nucleotides Shew_0766: Shew_0766 - RND family efflux transporter MFP subunit (RefSeq), at 873,696 to 874,919 _0766 Shew_0767: Shew_0767 - ATP-dependent RNA helicase SrmB (RefSeq), at 875,149 to 876,408 _0767 Shew_0768: Shew_0768 - methyltransferase small (RefSeq), at 876,459 to 877,190 _0768 Position (kb) 875 876 877Strain fitness (log2 ratio) -1 0 1at 874.210 kb on + strand, within Shew_0766at 874.226 kb on + strand, within Shew_0766at 874.269 kb on + strand, within Shew_0766at 874.296 kb on - strand, within Shew_0766at 874.400 kb on - strand, within Shew_0766at 875.200 kb on - strandat 876.117 kb on + strand, within Shew_0767at 876.266 kb on - strand, within Shew_0767at 876.288 kb on + strandat 876.457 kb on + strandat 876.865 kb on - strand, within Shew_0768at 876.983 kb on - strand, within Shew_0768at 877.213 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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874,210 + Shew_0766 0.42 -0.7
874,226 + Shew_0766 0.43 +0.5
874,269 + Shew_0766 0.47 +1.0
874,296 - Shew_0766 0.49 +0.2
874,400 - Shew_0766 0.58 -0.6
875,200 - -0.2
876,117 + Shew_0767 0.77 -0.7
876,266 - Shew_0767 0.89 -1.5
876,288 + -0.3
876,457 + +0.2
876,865 - Shew_0768 0.55 -0.2
876,983 - Shew_0768 0.72 +0.0
877,213 - -0.1

Or see this region's nucleotide sequence