Strain Fitness in Shewanella loihica PV-4 around Shew_0711

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmetH and Shew_0711 are separated by 329 nucleotidesShew_0711 and Shew_0712 are separated by 334 nucleotides Shew_0710: metH - B12-dependent methionine synthase (RefSeq), at 807,370 to 811,092 metH Shew_0711: Shew_0711 - phosphoglycerate mutase (RefSeq), at 811,422 to 812,033 _0711 Shew_0712: Shew_0712 - ABC transporter-related protein (RefSeq), at 812,368 to 813,342 _0712 Position (kb) 811 812 813Strain fitness (log2 ratio) -3 -2 -1 0 1at 810.626 kb on - strand, within metHat 811.517 kb on - strand, within Shew_0711at 811.548 kb on - strand, within Shew_0711at 811.558 kb on - strand, within Shew_0711at 811.686 kb on + strand, within Shew_0711at 811.689 kb on - strand, within Shew_0711at 811.691 kb on + strand, within Shew_0711at 811.696 kb on + strand, within Shew_0711at 812.181 kb on + strandat 812.197 kb on + strandat 812.564 kb on + strand, within Shew_0712at 812.773 kb on - strand, within Shew_0712at 812.868 kb on + strand, within Shew_0712at 812.883 kb on + strand, within Shew_0712at 813.006 kb on + strand, within Shew_0712at 813.006 kb on + strand, within Shew_0712at 813.006 kb on + strand, within Shew_0712at 813.006 kb on + strand, within Shew_0712at 813.014 kb on - strand, within Shew_0712at 813.014 kb on - strand, within Shew_0712at 813.014 kb on - strand, within Shew_0712

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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810,626 - metH Shew_0710 0.87 -0.2
811,517 - Shew_0711 0.16 -0.4
811,548 - Shew_0711 0.21 -0.4
811,558 - Shew_0711 0.22 +0.3
811,686 + Shew_0711 0.43 -0.1
811,689 - Shew_0711 0.44 -0.5
811,691 + Shew_0711 0.44 -0.2
811,696 + Shew_0711 0.45 +0.1
812,181 + -2.9
812,197 + -0.6
812,564 + Shew_0712 0.20 +0.5
812,773 - Shew_0712 0.42 -0.3
812,868 + Shew_0712 0.51 -0.1
812,883 + Shew_0712 0.53 +0.2
813,006 + Shew_0712 0.65 -0.4
813,006 + Shew_0712 0.65 +1.2
813,006 + Shew_0712 0.65 +0.1
813,006 + Shew_0712 0.65 -0.1
813,014 - Shew_0712 0.66 +0.4
813,014 - Shew_0712 0.66 -0.3
813,014 - Shew_0712 0.66 +0.7

Or see this region's nucleotide sequence