Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0629 and Shew_0630 are separated by 2 nucleotides Shew_0630 and Shew_0631 are separated by 3 nucleotides Shew_0631 and Shew_0632 are separated by 86 nucleotides
Shew_0629: Shew_0629 - extracellular solute-binding protein (RefSeq), at 715,941 to 716,714
_0629
Shew_0630: Shew_0630 - hypothetical protein (RefSeq), at 716,717 to 717,529
_0630
Shew_0631: Shew_0631 - AFG1 family ATPase (RefSeq), at 717,533 to 718,699
_0631
Shew_0632: Shew_0632 - OmpA/MotB domain-containing protein (RefSeq), at 718,786 to 720,231
_0632
Position (kb) 717
718
719 Strain fitness (log2 ratio) -1
0
1 at 716.648 kb on + strand at 717.235 kb on + strand, within Shew_0630 at 717.271 kb on + strand, within Shew_0630 at 717.492 kb on - strand at 717.531 kb on + strand at 717.636 kb on + strand at 717.636 kb on + strand at 717.636 kb on + strand at 717.644 kb on - strand at 717.644 kb on - strand at 718.228 kb on + strand, within Shew_0631 at 718.323 kb on + strand, within Shew_0631 at 718.383 kb on + strand, within Shew_0631 at 718.383 kb on + strand, within Shew_0631 at 718.543 kb on + strand, within Shew_0631 at 718.551 kb on - strand, within Shew_0631 at 718.849 kb on - strand at 718.897 kb on - strand at 718.897 kb on - strand at 718.943 kb on + strand, within Shew_0632 at 719.000 kb on - strand, within Shew_0632 at 719.214 kb on + strand, within Shew_0632 at 719.214 kb on + strand, within Shew_0632 at 719.214 kb on + strand, within Shew_0632 at 719.222 kb on - strand, within Shew_0632 at 719.343 kb on - strand, within Shew_0632 at 719.388 kb on - strand, within Shew_0632 at 719.432 kb on + strand, within Shew_0632 at 719.440 kb on - strand, within Shew_0632 at 719.462 kb on + strand, within Shew_0632 at 719.506 kb on - strand, within Shew_0632 at 719.519 kb on + strand, within Shew_0632 at 719.521 kb on - strand, within Shew_0632
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 716,648 + -1.0 717,235 + Shew_0630 0.64 -0.4 717,271 + Shew_0630 0.68 +0.1 717,492 - +0.2 717,531 + +0.1 717,636 + -0.1 717,636 + -0.0 717,636 + -0.6 717,644 - -0.0 717,644 - +1.1 718,228 + Shew_0631 0.60 +0.2 718,323 + Shew_0631 0.68 -0.1 718,383 + Shew_0631 0.73 -0.2 718,383 + Shew_0631 0.73 +0.1 718,543 + Shew_0631 0.87 +0.4 718,551 - Shew_0631 0.87 -0.8 718,849 - -0.2 718,897 - -0.4 718,897 - -0.6 718,943 + Shew_0632 0.11 +0.5 719,000 - Shew_0632 0.15 -0.0 719,214 + Shew_0632 0.30 -0.0 719,214 + Shew_0632 0.30 -0.0 719,214 + Shew_0632 0.30 +0.6 719,222 - Shew_0632 0.30 -0.5 719,343 - Shew_0632 0.39 -0.8 719,388 - Shew_0632 0.42 +0.0 719,432 + Shew_0632 0.45 +0.1 719,440 - Shew_0632 0.45 +0.1 719,462 + Shew_0632 0.47 -0.5 719,506 - Shew_0632 0.50 +0.5 719,519 + Shew_0632 0.51 +0.5 719,521 - Shew_0632 0.51 -0.0
Or see this region's nucleotide sequence