Strain Fitness in Shewanella loihica PV-4 around Shew_0562

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0561 and Shew_0562 are separated by 100 nucleotidesShew_0562 and Shew_0563 overlap by 14 nucleotides Shew_0561: Shew_0561 - carbohydrate kinase, YjeF-related protein (RefSeq), at 635,897 to 637,375 _0561 Shew_0562: Shew_0562 - hypothetical protein (RefSeq), at 637,476 to 637,949 _0562 Shew_0563: Shew_0563 - N-acetylmuramoyl-L-alanine amidase (RefSeq), at 637,936 to 639,255 _0563 Position (kb) 637 638Strain fitness (log2 ratio) -2 -1 0 1at 636.557 kb on - strand, within Shew_0561at 636.638 kb on - strand, within Shew_0561at 636.832 kb on - strand, within Shew_0561at 636.863 kb on - strand, within Shew_0561at 636.863 kb on - strand, within Shew_0561at 636.868 kb on - strand, within Shew_0561at 637.105 kb on + strand, within Shew_0561at 637.369 kb on + strandat 637.369 kb on + strandat 637.377 kb on - strandat 637.377 kb on - strandat 638.948 kb on + strand, within Shew_0563

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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636,557 - Shew_0561 0.45 +0.1
636,638 - Shew_0561 0.50 -0.1
636,832 - Shew_0561 0.63 -1.0
636,863 - Shew_0561 0.65 +0.1
636,863 - Shew_0561 0.65 -0.1
636,868 - Shew_0561 0.66 +0.0
637,105 + Shew_0561 0.82 -0.3
637,369 + +0.2
637,369 + +0.4
637,377 - -0.1
637,377 - +0.6
638,948 + Shew_0563 0.77 -1.8

Or see this region's nucleotide sequence