Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0495 and Shew_0496 are separated by 354 nucleotides Shew_0496 and Shew_0497 are separated by 892 nucleotides
Shew_0495: Shew_0495 - hypothetical protein (RefSeq), at 551,984 to 552,685
_0495
Shew_0496: Shew_0496 - amino acid carrier protein (RefSeq), at 553,040 to 554,413
_0496
Shew_0497: Shew_0497 - putative sulfate transporter YchM (RefSeq), at 555,306 to 557,003
_0497
Position (kb) 553
554
555 Strain fitness (log2 ratio) -1
0
1
2 at 552.284 kb on - strand, within Shew_0495 at 552.763 kb on - strand at 553.116 kb on - strand at 553.123 kb on + strand at 553.344 kb on - strand, within Shew_0496 at 553.354 kb on - strand, within Shew_0496 at 553.458 kb on + strand, within Shew_0496 at 553.580 kb on + strand, within Shew_0496 at 553.773 kb on + strand, within Shew_0496 at 553.870 kb on - strand, within Shew_0496 at 554.021 kb on - strand, within Shew_0496 at 554.021 kb on - strand, within Shew_0496 at 554.450 kb on + strand at 554.539 kb on - strand at 554.573 kb on + strand at 554.670 kb on + strand at 554.737 kb on + strand at 555.009 kb on + strand at 555.036 kb on + strand at 555.049 kb on - strand at 555.049 kb on - strand at 555.202 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 552,284 - Shew_0495 0.43 -0.8 552,763 - -0.4 553,116 - +1.8 553,123 + -1.3 553,344 - Shew_0496 0.22 -0.3 553,354 - Shew_0496 0.23 -0.0 553,458 + Shew_0496 0.30 -0.1 553,580 + Shew_0496 0.39 -0.5 553,773 + Shew_0496 0.53 +0.7 553,870 - Shew_0496 0.60 +0.0 554,021 - Shew_0496 0.71 -0.1 554,021 - Shew_0496 0.71 -0.0 554,450 + +0.4 554,539 - -0.4 554,573 + +0.4 554,670 + -0.7 554,737 + -0.2 555,009 + -0.4 555,036 + +0.3 555,049 - +0.4 555,049 - -0.1 555,202 - -0.4
Or see this region's nucleotide sequence