Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08710

Experiment: H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 FREE

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 FREE
1,602,409	-				-0.1
1,602,409	-				-0.1
1,602,426	-				-0.3
1,602,426	-				+0.8
1,602,426	-				-0.6
1,602,426	-				+1.9
1,602,426	-				-0.4
1,602,426	-				-0.3
1,602,427	+				+0.6
1,602,427	+				+0.2
1,602,427	+				+0.2
1,602,427	+				+0.2
1,602,427	+				+0.6
1,602,459	+				-0.1
1,602,556	-		MMJJ_RS08705	0.17	+1.5
1,602,560	-		MMJJ_RS08705	0.17	+0.3
1,602,560	-		MMJJ_RS08705	0.17	+0.9
1,602,561	+		MMJJ_RS08705	0.17	+1.5
1,602,564	+		MMJJ_RS08705	0.17	+0.8
1,602,568	-		MMJJ_RS08705	0.18	+0.7
1,602,569	+		MMJJ_RS08705	0.18	+1.8
1,602,610	-		MMJJ_RS08705	0.22	+0.7
1,602,613	-		MMJJ_RS08705	0.23	+1.9
1,602,613	-		MMJJ_RS08705	0.23	+0.2
1,602,648	-		MMJJ_RS08705	0.27	-0.3
1,602,648	-		MMJJ_RS08705	0.27	-0.4
1,602,649	+		MMJJ_RS08705	0.27	+0.0
1,602,650	-		MMJJ_RS08705	0.27	+0.3
1,602,650	-		MMJJ_RS08705	0.27	-0.5
1,602,650	-		MMJJ_RS08705	0.27	+1.8
1,602,651	+		MMJJ_RS08705	0.27	-0.3
1,602,651	+		MMJJ_RS08705	0.27	+0.4
1,602,701	+		MMJJ_RS08705	0.32	+0.7
1,602,834	-		MMJJ_RS08705	0.47	+0.6
1,602,834	-		MMJJ_RS08705	0.47	-0.6
1,602,834	-		MMJJ_RS08705	0.47	+0.4
1,602,835	+		MMJJ_RS08705	0.47	+0.6
1,602,835	+		MMJJ_RS08705	0.47	+0.2
1,602,835	+		MMJJ_RS08705	0.47	+0.6
1,602,914	+		MMJJ_RS08705	0.56	+0.3
1,602,931	-		MMJJ_RS08705	0.57	-0.1
1,603,016	+		MMJJ_RS08705	0.67	+2.4
1,603,090	-		MMJJ_RS08705	0.75	+0.1
1,603,103	+		MMJJ_RS08705	0.76	+0.4
1,603,157	+		MMJJ_RS08705	0.82	-0.2
1,603,160	-		MMJJ_RS08705	0.83	-0.3
1,603,210	-		MMJJ_RS08705	0.88	+0.2
1,603,210	-		MMJJ_RS08705	0.88	+1.5
1,603,240	-				+1.2
1,603,279	-				-0.7
1,603,280	+				+0.7
1,603,280	+				-0.1
1,603,280	+				+0.3
1,603,301	+				-0.6
1,603,301	+				+0.4
1,603,305	-				+0.9
1,603,306	+				-0.3
1,603,312	-				+0.1
1,603,330	-				-0.3
1,603,345	-				-2.0
1,603,345	-				+1.7
1,603,363	-				-0.2
1,603,363	-				+1.2
1,603,364	+				-0.5
1,603,364	+				+2.5
1,603,366	-				+1.9
1,603,366	-				+1.9
1,603,367	+				-0.1
1,603,370	+				+2.0
1,603,370	+				+0.5
1,603,372	+				+0.6
1,603,392	+				+2.1
1,603,412	-				+1.0
1,603,499	-		MMJJ_RS08710	0.12	-0.1
1,603,500	+		MMJJ_RS08710	0.13	+1.7
1,603,500	+		MMJJ_RS08710	0.13	-0.4
1,603,500	+		MMJJ_RS08710	0.13	+1.2
1,603,504	-		MMJJ_RS08710	0.13	+0.0
1,603,504	-		MMJJ_RS08710	0.13	-0.5
1,603,504	-		MMJJ_RS08710	0.13	+0.7
1,603,505	+		MMJJ_RS08710	0.13	+0.1
1,603,509	+		MMJJ_RS08710	0.14	+2.0
1,603,548	+		MMJJ_RS08710	0.18	+0.5
1,603,551	+		MMJJ_RS08710	0.19	+1.0
1,603,555	+		MMJJ_RS08710	0.19	+0.4
1,603,662	-		MMJJ_RS08710	0.32	+0.6
1,603,663	+		MMJJ_RS08710	0.32	+1.7
1,603,665	-		MMJJ_RS08710	0.32	+0.7
1,603,681	+		MMJJ_RS08710	0.34	+0.7
1,603,681	+		MMJJ_RS08710	0.34	+1.0
1,603,681	+		MMJJ_RS08710	0.34	+2.4
1,603,681	+		MMJJ_RS08710	0.34	+2.1
1,603,682	-		MMJJ_RS08710	0.34	-0.0
1,603,683	+		MMJJ_RS08710	0.34	+0.6
1,603,683	+		MMJJ_RS08710	0.34	+2.1
1,603,684	-		MMJJ_RS08710	0.34	-0.6
1,603,684	-		MMJJ_RS08710	0.34	-0.2
1,603,688	+		MMJJ_RS08710	0.35	-0.5
1,603,688	+		MMJJ_RS08710	0.35	+2.0
1,603,728	+		MMJJ_RS08710	0.39	+0.3
1,603,766	-		MMJJ_RS08710	0.44	+3.2
1,603,766	-		MMJJ_RS08710	0.44	+0.3
1,603,770	+		MMJJ_RS08710	0.44	-0.8
1,603,884	-		MMJJ_RS08710	0.58	+0.6
1,603,899	+		MMJJ_RS08710	0.60	-0.8
1,603,961	-		MMJJ_RS08710	0.67	-0.2
1,603,985	-		MMJJ_RS08710	0.70	+0.4
1,604,000	+		MMJJ_RS08710	0.71	+1.1
1,604,004	+		MMJJ_RS08710	0.72	+1.1
1,604,070	-		MMJJ_RS08710	0.80	+0.5
1,604,142	-		MMJJ_RS08710	0.88	+0.7
1,604,196	-				+1.5
1,604,196	-				+0.9
1,604,197	+				-0.7
1,604,197	+				+0.6
1,604,198	-				+0.6
1,604,199	+				+1.2
1,604,199	+				-0.8
1,604,199	+				+1.4
1,604,216	+				-0.4
1,604,246	+				+0.4
1,604,247	-				+1.2
1,604,251	-				+0.5
1,604,251	-				+0.4
1,604,251	-				-0.1
1,604,251	-				+1.1
1,604,251	-				+1.4
1,604,252	+				+1.0
1,604,252	+				+1.4
1,604,254	-				-0.3
1,604,254	-				+0.0
1,604,255	+				+0.2
1,604,259	-				+0.1
1,604,363	-		MMJJ_RS08715	0.10	+1.4
1,604,372	-		MMJJ_RS08715	0.11	+0.3
1,604,373	+		MMJJ_RS08715	0.11	+0.4
1,604,433	+		MMJJ_RS08715	0.18	+0.1
1,604,532	-		MMJJ_RS08715	0.29	+3.0
1,604,595	-		MMJJ_RS08715	0.37	+0.9
1,604,597	-		MMJJ_RS08715	0.37	+0.2
1,604,598	+		MMJJ_RS08715	0.37	+0.7
1,604,598	+		MMJJ_RS08715	0.37	+1.0
1,604,636	+		MMJJ_RS08715	0.41	+1.7
1,604,710	-		MMJJ_RS08715	0.50	+1.6
1,604,710	-		MMJJ_RS08715	0.50	+0.5
1,604,712	-		MMJJ_RS08715	0.50	+2.1
1,604,722	-		MMJJ_RS08715	0.51	+0.3
1,604,725	+		MMJJ_RS08715	0.51	+0.8
1,604,752	+		MMJJ_RS08715	0.54	+2.0
1,604,757	+		MMJJ_RS08715	0.55	+2.2
1,604,951	-		MMJJ_RS08715	0.77	+0.4
1,604,952	+		MMJJ_RS08715	0.77	+2.0
1,604,952	+		MMJJ_RS08715	0.77	-0.2
1,604,955	-		MMJJ_RS08715	0.78	+0.7
1,604,955	-		MMJJ_RS08715	0.78	+0.0
1,604,957	-		MMJJ_RS08715	0.78	+1.0
1,604,957	-		MMJJ_RS08715	0.78	+0.6
1,604,957	-		MMJJ_RS08715	0.78	+0.3
1,604,958	+		MMJJ_RS08715	0.78	+2.0
1,604,958	+		MMJJ_RS08715	0.78	+0.0
1,605,034	+		MMJJ_RS08715	0.87	+0.7
1,605,038	+		MMJJ_RS08715	0.87	+1.0
1,605,064	-				+0.8
1,605,071	-				+1.6
1,605,071	-				+1.9
1,605,072	+				-0.0
1,605,073	-				+2.0
1,605,073	-				+1.0
1,605,073	-				-0.2
1,605,073	-				+0.4
1,605,073	-				+0.2
1,605,073	-				+2.8
1,605,073	-				-0.1
1,605,073	-				-0.9
1,605,074	+				+0.8
1,605,074	+				-0.7
1,605,074	+				+0.3
1,605,074	+				+1.6
1,605,074	+				+0.5
1,605,074	+				-0.6
1,605,074	+				+1.4
1,605,074	+				+0.7
1,605,074	+				+0.1
1,605,074	+				+2.5
1,605,074	+				+0.8
1,605,074	+				+0.4
1,605,074	+				-0.6
1,605,074	+				+0.2
1,605,075	-				+0.7
1,605,075	-				-0.6
1,605,075	-				+0.2
1,605,076	+				+0.8
1,605,076	+				+0.7
1,605,101	-				+1.7
1,605,148	-				+2.7
1,605,153	-				+1.7
1,605,153	-				+1.5
1,605,154	+				+2.0
1,605,154	+				+0.0
1,605,193	-				+2.5
1,605,193	-				+1.2
1,605,203	-				+1.6