Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS24735

Experiment: R2A with A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS24725 and CA265_RS24730 are separated by 226 nucleotidesCA265_RS24730 and CA265_RS24735 are separated by 70 nucleotidesCA265_RS24735 and CA265_RS24740 are separated by 224 nucleotides CA265_RS24725: CA265_RS24725 - multidrug transporter, at 6,037,484 to 6,040,510 _RS24725 CA265_RS24730: CA265_RS24730 - tRNA-Gln, at 6,040,737 to 6,040,810 _RS24730 CA265_RS24735: CA265_RS24735 - ribose-phosphate pyrophosphokinase, at 6,040,881 to 6,041,822 _RS24735 CA265_RS24740: CA265_RS24740 - 50S ribosomal protein L25/general stress protein Ctc, at 6,042,047 to 6,042,631 _RS24740 Position (kb) 6040 6041 6042Strain fitness (log2 ratio) -2 -1 0 1 2at 6039.905 kb on + strand, within CA265_RS24725at 6039.922 kb on + strand, within CA265_RS24725at 6039.967 kb on - strand, within CA265_RS24725at 6039.967 kb on - strand, within CA265_RS24725at 6040.041 kb on - strand, within CA265_RS24725at 6040.072 kb on - strand, within CA265_RS24725at 6040.085 kb on + strand, within CA265_RS24725at 6040.086 kb on - strand, within CA265_RS24725at 6040.125 kb on - strand, within CA265_RS24725at 6040.125 kb on - strand, within CA265_RS24725at 6040.219 kb on + strandat 6040.274 kb on - strandat 6040.284 kb on + strandat 6040.289 kb on + strandat 6040.503 kb on + strandat 6040.522 kb on - strandat 6041.820 kb on + strandat 6041.820 kb on + strandat 6041.852 kb on + strandat 6041.874 kb on + strandat 6041.874 kb on + strandat 6041.894 kb on + strandat 6041.944 kb on + strandat 6041.950 kb on + strandat 6042.697 kb on + strandat 6042.768 kb on - strandat 6042.777 kb on + strandat 6042.779 kb on + strandat 6042.780 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with A22 0.04 mg/ml
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6,039,905 + CA265_RS24725 0.80 +0.1
6,039,922 + CA265_RS24725 0.81 -0.5
6,039,967 - CA265_RS24725 0.82 +0.2
6,039,967 - CA265_RS24725 0.82 -0.6
6,040,041 - CA265_RS24725 0.84 -0.8
6,040,072 - CA265_RS24725 0.85 +0.9
6,040,085 + CA265_RS24725 0.86 +1.3
6,040,086 - CA265_RS24725 0.86 +0.6
6,040,125 - CA265_RS24725 0.87 -0.7
6,040,125 - CA265_RS24725 0.87 +0.3
6,040,219 + -0.7
6,040,274 - +0.4
6,040,284 + -0.2
6,040,289 + +1.8
6,040,503 + -0.6
6,040,522 - +0.4
6,041,820 + +0.1
6,041,820 + +0.4
6,041,852 + -1.5
6,041,874 + -0.3
6,041,874 + -0.3
6,041,894 + -0.8
6,041,944 + -1.5
6,041,950 + +0.3
6,042,697 + -1.2
6,042,768 - -0.0
6,042,777 + -1.9
6,042,779 + +0.7
6,042,780 - +1.0

Or see this region's nucleotide sequence