Experiment: R2A with A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS24430 and CA265_RS24435 are separated by 199 nucleotides CA265_RS24435 and CA265_RS24440 are separated by 10 nucleotides
CA265_RS24430: CA265_RS24430 - hypothetical protein, at 5,950,081 to 5,950,698
_RS24430
CA265_RS24435: CA265_RS24435 - hypothetical protein, at 5,950,898 to 5,952,796
_RS24435
CA265_RS24440: CA265_RS24440 - hypothetical protein, at 5,952,807 to 5,953,856
_RS24440
Position (kb) 5950
5951
5952
5953 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5949.910 kb on - strand at 5950.019 kb on - strand at 5950.094 kb on + strand at 5950.097 kb on + strand at 5950.260 kb on - strand, within CA265_RS24430 at 5950.272 kb on + strand, within CA265_RS24430 at 5950.288 kb on - strand, within CA265_RS24430 at 5950.463 kb on + strand, within CA265_RS24430 at 5950.464 kb on - strand, within CA265_RS24430 at 5950.482 kb on + strand, within CA265_RS24430 at 5950.540 kb on + strand, within CA265_RS24430 at 5950.541 kb on - strand, within CA265_RS24430 at 5950.541 kb on - strand, within CA265_RS24430 at 5950.543 kb on - strand, within CA265_RS24430 at 5950.645 kb on - strand at 5950.645 kb on - strand at 5950.697 kb on - strand at 5950.717 kb on + strand at 5950.873 kb on - strand at 5950.906 kb on + strand at 5951.010 kb on - strand at 5951.010 kb on - strand at 5951.051 kb on + strand at 5951.054 kb on - strand at 5951.058 kb on + strand at 5951.059 kb on - strand at 5951.097 kb on + strand, within CA265_RS24435 at 5951.168 kb on - strand, within CA265_RS24435 at 5951.181 kb on - strand, within CA265_RS24435 at 5951.181 kb on - strand, within CA265_RS24435 at 5951.187 kb on - strand, within CA265_RS24435 at 5951.187 kb on - strand, within CA265_RS24435 at 5951.196 kb on - strand, within CA265_RS24435 at 5951.228 kb on - strand, within CA265_RS24435 at 5951.263 kb on - strand, within CA265_RS24435 at 5951.277 kb on - strand, within CA265_RS24435 at 5951.351 kb on - strand, within CA265_RS24435 at 5951.402 kb on - strand, within CA265_RS24435 at 5951.427 kb on - strand, within CA265_RS24435 at 5951.465 kb on - strand, within CA265_RS24435 at 5951.465 kb on - strand, within CA265_RS24435 at 5951.531 kb on - strand, within CA265_RS24435 at 5951.556 kb on - strand, within CA265_RS24435 at 5951.560 kb on - strand, within CA265_RS24435 at 5951.560 kb on - strand, within CA265_RS24435 at 5951.641 kb on - strand, within CA265_RS24435 at 5951.928 kb on - strand, within CA265_RS24435 at 5951.928 kb on - strand, within CA265_RS24435 at 5951.981 kb on - strand, within CA265_RS24435 at 5951.981 kb on - strand, within CA265_RS24435 at 5951.995 kb on - strand, within CA265_RS24435 at 5952.076 kb on - strand, within CA265_RS24435 at 5952.203 kb on - strand, within CA265_RS24435 at 5952.306 kb on - strand, within CA265_RS24435 at 5952.368 kb on - strand, within CA265_RS24435 at 5952.368 kb on - strand, within CA265_RS24435 at 5952.463 kb on - strand, within CA265_RS24435 at 5952.508 kb on - strand, within CA265_RS24435 at 5952.599 kb on - strand, within CA265_RS24435 at 5952.610 kb on - strand at 5952.610 kb on - strand at 5952.628 kb on - strand at 5952.628 kb on - strand at 5952.628 kb on - strand at 5952.671 kb on - strand at 5952.699 kb on - strand at 5952.699 kb on - strand at 5952.699 kb on - strand at 5952.699 kb on - strand at 5952.723 kb on - strand at 5952.884 kb on + strand at 5952.940 kb on - strand, within CA265_RS24440 at 5952.952 kb on - strand, within CA265_RS24440 at 5952.957 kb on + strand, within CA265_RS24440 at 5952.962 kb on - strand, within CA265_RS24440 at 5953.051 kb on + strand, within CA265_RS24440 at 5953.070 kb on + strand, within CA265_RS24440 at 5953.070 kb on + strand, within CA265_RS24440 at 5953.072 kb on + strand, within CA265_RS24440 at 5953.072 kb on + strand, within CA265_RS24440 at 5953.073 kb on - strand, within CA265_RS24440 at 5953.092 kb on - strand, within CA265_RS24440 at 5953.092 kb on - strand, within CA265_RS24440 at 5953.100 kb on + strand, within CA265_RS24440 at 5953.102 kb on + strand, within CA265_RS24440 at 5953.139 kb on + strand, within CA265_RS24440 at 5953.161 kb on - strand, within CA265_RS24440 at 5953.187 kb on - strand, within CA265_RS24440 at 5953.216 kb on - strand, within CA265_RS24440 at 5953.229 kb on + strand, within CA265_RS24440 at 5953.230 kb on - strand, within CA265_RS24440 at 5953.258 kb on + strand, within CA265_RS24440 at 5953.262 kb on + strand at 5953.271 kb on + strand, within CA265_RS24440 at 5953.281 kb on + strand, within CA265_RS24440 at 5953.282 kb on - strand, within CA265_RS24440 at 5953.282 kb on - strand, within CA265_RS24440 at 5953.337 kb on + strand, within CA265_RS24440 at 5953.338 kb on - strand, within CA265_RS24440 at 5953.346 kb on + strand, within CA265_RS24440 at 5953.380 kb on - strand, within CA265_RS24440 at 5953.396 kb on - strand, within CA265_RS24440 at 5953.396 kb on - strand, within CA265_RS24440 at 5953.421 kb on + strand, within CA265_RS24440 at 5953.431 kb on + strand, within CA265_RS24440 at 5953.433 kb on + strand, within CA265_RS24440 at 5953.534 kb on - strand, within CA265_RS24440 at 5953.596 kb on + strand, within CA265_RS24440 at 5953.597 kb on - strand, within CA265_RS24440 at 5953.614 kb on + strand, within CA265_RS24440 at 5953.756 kb on + strand at 5953.770 kb on + strand at 5953.773 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with A22 0.04 mg/ml remove 5,949,910 - +0.1 5,950,019 - +0.4 5,950,094 + +1.2 5,950,097 + -0.8 5,950,260 - CA265_RS24430 0.29 -0.4 5,950,272 + CA265_RS24430 0.31 -0.9 5,950,288 - CA265_RS24430 0.33 -1.4 5,950,463 + CA265_RS24430 0.62 -1.5 5,950,464 - CA265_RS24430 0.62 -0.3 5,950,482 + CA265_RS24430 0.65 -0.5 5,950,540 + CA265_RS24430 0.74 -1.1 5,950,541 - CA265_RS24430 0.74 +0.1 5,950,541 - CA265_RS24430 0.74 +0.3 5,950,543 - CA265_RS24430 0.75 +0.1 5,950,645 - +1.2 5,950,645 - -0.2 5,950,697 - +0.3 5,950,717 + -1.2 5,950,873 - -1.7 5,950,906 + +0.2 5,951,010 - -0.3 5,951,010 - +0.9 5,951,051 + -2.0 5,951,054 - -0.7 5,951,058 + -1.0 5,951,059 - -0.4 5,951,097 + CA265_RS24435 0.10 +0.4 5,951,168 - CA265_RS24435 0.14 +0.4 5,951,181 - CA265_RS24435 0.15 +1.3 5,951,181 - CA265_RS24435 0.15 +0.3 5,951,187 - CA265_RS24435 0.15 -0.7 5,951,187 - CA265_RS24435 0.15 -0.5 5,951,196 - CA265_RS24435 0.16 +1.1 5,951,228 - CA265_RS24435 0.17 -0.6 5,951,263 - CA265_RS24435 0.19 +1.4 5,951,277 - CA265_RS24435 0.20 +0.1 5,951,351 - CA265_RS24435 0.24 +0.6 5,951,402 - CA265_RS24435 0.27 +0.6 5,951,427 - CA265_RS24435 0.28 -0.1 5,951,465 - CA265_RS24435 0.30 +0.6 5,951,465 - CA265_RS24435 0.30 +0.1 5,951,531 - CA265_RS24435 0.33 -0.1 5,951,556 - CA265_RS24435 0.35 +0.5 5,951,560 - CA265_RS24435 0.35 +0.2 5,951,560 - CA265_RS24435 0.35 +0.1 5,951,641 - CA265_RS24435 0.39 -0.2 5,951,928 - CA265_RS24435 0.54 -0.4 5,951,928 - CA265_RS24435 0.54 +0.9 5,951,981 - CA265_RS24435 0.57 +0.1 5,951,981 - CA265_RS24435 0.57 +0.7 5,951,995 - CA265_RS24435 0.58 +0.4 5,952,076 - CA265_RS24435 0.62 -0.1 5,952,203 - CA265_RS24435 0.69 -0.1 5,952,306 - CA265_RS24435 0.74 -0.3 5,952,368 - CA265_RS24435 0.77 -0.1 5,952,368 - CA265_RS24435 0.77 -0.6 5,952,463 - CA265_RS24435 0.82 +1.3 5,952,508 - CA265_RS24435 0.85 +0.1 5,952,599 - CA265_RS24435 0.90 -0.0 5,952,610 - -0.8 5,952,610 - +0.2 5,952,628 - +0.9 5,952,628 - -0.5 5,952,628 - -0.0 5,952,671 - +0.6 5,952,699 - +1.1 5,952,699 - +0.9 5,952,699 - +0.5 5,952,699 - +0.7 5,952,723 - +0.5 5,952,884 + -1.3 5,952,940 - CA265_RS24440 0.13 +0.3 5,952,952 - CA265_RS24440 0.14 +1.1 5,952,957 + CA265_RS24440 0.14 +0.2 5,952,962 - CA265_RS24440 0.15 +1.2 5,953,051 + CA265_RS24440 0.23 -0.4 5,953,070 + CA265_RS24440 0.25 -0.3 5,953,070 + CA265_RS24440 0.25 +0.2 5,953,072 + CA265_RS24440 0.25 +0.4 5,953,072 + CA265_RS24440 0.25 -0.1 5,953,073 - CA265_RS24440 0.25 -1.0 5,953,092 - CA265_RS24440 0.27 -0.7 5,953,092 - CA265_RS24440 0.27 -0.5 5,953,100 + CA265_RS24440 0.28 -0.3 5,953,102 + CA265_RS24440 0.28 -0.7 5,953,139 + CA265_RS24440 0.32 -0.9 5,953,161 - CA265_RS24440 0.34 +0.4 5,953,187 - CA265_RS24440 0.36 -0.8 5,953,216 - CA265_RS24440 0.39 +0.1 5,953,229 + CA265_RS24440 0.40 -0.5 5,953,230 - CA265_RS24440 0.40 +0.0 5,953,258 + CA265_RS24440 0.43 -0.7 5,953,262 + +0.2 5,953,271 + CA265_RS24440 0.44 +0.2 5,953,281 + CA265_RS24440 0.45 -0.1 5,953,282 - CA265_RS24440 0.45 +0.5 5,953,282 - CA265_RS24440 0.45 +0.4 5,953,337 + CA265_RS24440 0.50 -0.4 5,953,338 - CA265_RS24440 0.51 -1.1 5,953,346 + CA265_RS24440 0.51 +1.8 5,953,380 - CA265_RS24440 0.55 -0.1 5,953,396 - CA265_RS24440 0.56 +2.5 5,953,396 - CA265_RS24440 0.56 -0.0 5,953,421 + CA265_RS24440 0.58 -0.6 5,953,431 + CA265_RS24440 0.59 -1.4 5,953,433 + CA265_RS24440 0.60 -0.2 5,953,534 - CA265_RS24440 0.69 +0.3 5,953,596 + CA265_RS24440 0.75 -0.7 5,953,597 - CA265_RS24440 0.75 +0.0 5,953,614 + CA265_RS24440 0.77 +0.1 5,953,756 + +0.8 5,953,770 + +0.4 5,953,773 - -1.1
Or see this region's nucleotide sequence