Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS23930

Experiment: R2A with A22 0.04 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with A22 0.04 mg/ml
5,836,394	+				+0.1
5,836,401	+				-1.0
5,836,409	+				-0.2
5,836,410	-				-0.3
5,836,411	+				-0.5
5,836,412	-				-1.2
5,836,412	-				+0.6
5,836,449	-				-0.3
5,836,455	+				-0.5
5,836,455	+				-0.3
5,836,474	+				+0.3
5,836,503	+				-0.4
5,836,503	+				-0.2
5,836,542	-				-0.5
5,836,569	+				+0.8
5,836,570	-				+0.3
5,836,574	-				+0.3
5,836,582	-				+0.4
5,836,653	+				+0.1
5,836,672	+		CA265_RS23925	0.10	+0.8
5,836,713	+				+0.3
5,836,730	+		CA265_RS23925	0.26	-0.5
5,836,731	-		CA265_RS23925	0.27	-0.6
5,836,731	-		CA265_RS23925	0.27	+0.6
5,836,786	-		CA265_RS23925	0.42	+0.3
5,836,801	+		CA265_RS23925	0.46	-0.8
5,836,881	-		CA265_RS23925	0.67	+0.1
5,836,882	+		CA265_RS23925	0.68	-0.1
5,836,891	-		CA265_RS23925	0.70	+0.8
5,836,971	+				-0.7
5,836,971	+				-0.7
5,837,067	-				-0.2
5,837,076	+				+0.2
5,837,076	+				+0.6
5,837,077	-				-1.6
5,837,077	-				-0.7
5,837,198	+		CA265_RS23930	0.20	-0.2
5,837,199	-		CA265_RS23930	0.20	-0.8
5,837,262	-		CA265_RS23930	0.26	-0.1
5,837,329	+		CA265_RS23930	0.33	-0.5
5,837,330	-		CA265_RS23930	0.33	-3.5
5,837,330	-		CA265_RS23930	0.33	-0.3
5,837,355	+		CA265_RS23930	0.35	+0.0
5,837,356	-		CA265_RS23930	0.35	-2.3
5,837,361	+		CA265_RS23930	0.35	-0.7
5,837,391	-		CA265_RS23930	0.38	-0.6
5,837,401	-		CA265_RS23930	0.39	-0.9
5,837,405	-		CA265_RS23930	0.40	-1.3
5,837,530	-		CA265_RS23930	0.51	-1.9
5,837,575	+		CA265_RS23930	0.55	-0.3
5,837,602	+		CA265_RS23930	0.58	-2.2
5,837,603	-		CA265_RS23930	0.58	-0.6
5,837,603	-		CA265_RS23930	0.58	-1.3
5,837,605	-		CA265_RS23930	0.58	-0.3
5,837,609	+		CA265_RS23930	0.58	-0.0
5,837,609	+		CA265_RS23930	0.58	-2.6
5,837,609	+		CA265_RS23930	0.58	-0.8
5,837,610	-		CA265_RS23930	0.58	+0.0
5,837,610	-		CA265_RS23930	0.58	-0.7
5,837,692	+		CA265_RS23930	0.66	+0.1
5,837,692	+		CA265_RS23930	0.66	-1.1
5,837,738	+		CA265_RS23930	0.70	-0.7
5,837,738	+		CA265_RS23930	0.70	-0.6
5,837,742	+		CA265_RS23930	0.71	+0.8
5,837,778	-		CA265_RS23930	0.74	-0.9
5,837,843	+		CA265_RS23930	0.80	-1.6
5,838,030	-				+0.2
5,838,030	-				-0.9
5,838,104	+				+0.6
5,838,104	+				+0.5
5,838,104	+				+0.2
5,838,104	+				-0.9
5,838,112	+				-0.0
5,838,116	+				+1.1
5,838,173	+				-1.2
5,838,174	-				+0.2
5,838,177	+				-0.4
5,838,177	+				+0.5
5,838,231	+		CA265_RS23935	0.15	+0.3
5,838,289	+		CA265_RS23935	0.26	-0.7
5,838,307	-		CA265_RS23935	0.30	-0.2
5,838,355	+		CA265_RS23935	0.39	-1.2
5,838,361	+		CA265_RS23935	0.40	+0.5
5,838,431	-		CA265_RS23935	0.53	+0.8
5,838,593	+		CA265_RS23935	0.84	+0.7
5,838,739	-				+0.4
5,838,770	-				-3.4
5,838,778	+				-1.0
5,838,785	+				+1.1
5,838,788	-				-0.2
5,838,789	+				+1.1
5,838,798	+				+0.7
5,838,825	+				-0.2
5,838,858	+		CA265_RS23940	0.13	-0.0
5,838,878	+		CA265_RS23940	0.16	+0.5
5,838,897	-		CA265_RS23940	0.19	-0.7
5,839,016	+		CA265_RS23940	0.38	-0.7
5,839,042	+		CA265_RS23940	0.42	-0.2
5,839,042	+		CA265_RS23940	0.42	-1.4