Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS12890

Experiment: R2A with A22 0.04 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with A22 0.04 mg/ml
3,210,087	+		CA265_RS12880	0.61	-1.0
3,210,115	-		CA265_RS12880	0.65	+0.2
3,210,204	-		CA265_RS12880	0.78	-0.0
3,210,204	-		CA265_RS12880	0.78	+0.1
3,210,206	-		CA265_RS12880	0.78	+0.2
3,210,300	+				+2.4
3,210,417	+				+0.3
3,210,464	+				-1.7
3,210,538	+		CA265_RS12885	0.10	+0.8
3,210,538	+		CA265_RS12885	0.10	-1.4
3,210,539	-		CA265_RS12885	0.10	-0.4
3,210,558	-		CA265_RS12885	0.14	-0.2
3,210,602	-		CA265_RS12885	0.21	-0.1
3,210,633	+		CA265_RS12885	0.26	-0.4
3,210,634	-		CA265_RS12885	0.26	+0.6
3,210,715	+		CA265_RS12885	0.40	-0.3
3,210,754	-		CA265_RS12885	0.47	+0.1
3,210,762	+		CA265_RS12885	0.48	-0.2
3,210,763	-		CA265_RS12885	0.49	-1.6
3,210,785	+		CA265_RS12885	0.52	-0.8
3,210,785	+		CA265_RS12885	0.52	+0.2
3,210,871	-		CA265_RS12885	0.67	+0.8
3,210,873	+		CA265_RS12885	0.67	-1.0
3,210,882	+		CA265_RS12885	0.69	+0.7
3,210,907	+		CA265_RS12885	0.73	-0.8
3,210,907	+		CA265_RS12885	0.73	-1.8
3,210,912	+		CA265_RS12885	0.74	-0.4
3,210,913	-		CA265_RS12885	0.74	+0.8
3,210,914	+		CA265_RS12885	0.74	+0.4
3,210,915	-		CA265_RS12885	0.75	-0.3
3,210,986	+		CA265_RS12885	0.87	+0.3
3,211,012	-				-0.9
3,211,022	+				+0.1
3,211,030	+				-0.7
3,211,031	-				+0.4
3,211,031	-				-0.7
3,211,031	-				+1.0
3,211,040	-				+0.4
3,211,271	+		CA265_RS12890	0.18	+0.4
3,211,271	+		CA265_RS12890	0.18	+1.4
3,211,272	-		CA265_RS12890	0.18	+2.7
3,211,310	+		CA265_RS12890	0.21	+1.7
3,211,310	+		CA265_RS12890	0.21	+1.8
3,211,351	+		CA265_RS12890	0.24	+1.6
3,211,352	-		CA265_RS12890	0.24	+1.4
3,211,417	+		CA265_RS12890	0.30	+1.0
3,211,426	+		CA265_RS12890	0.30	+1.2
3,211,430	-		CA265_RS12890	0.31	+2.1
3,211,448	+		CA265_RS12890	0.32	+1.2
3,211,449	-		CA265_RS12890	0.32	+0.9
3,211,499	+		CA265_RS12890	0.36	+1.2
3,211,583	+		CA265_RS12890	0.43	+1.2
3,211,619	+		CA265_RS12890	0.46	+1.8
3,211,619	+		CA265_RS12890	0.46	+2.2
3,211,620	-		CA265_RS12890	0.46	-1.0
3,211,691	-		CA265_RS12890	0.52	+1.4
3,211,749	+		CA265_RS12890	0.57	+0.2
3,211,750	-		CA265_RS12890	0.57	+0.6
3,211,769	-		CA265_RS12890	0.59	+1.1
3,211,769	-		CA265_RS12890	0.59	+1.1
3,211,775	-		CA265_RS12890	0.59	+0.1
3,211,791	+		CA265_RS12890	0.60	+0.7
3,211,791	+		CA265_RS12890	0.60	+1.7
3,211,799	+		CA265_RS12890	0.61	+2.9
3,211,799	+		CA265_RS12890	0.61	+0.7
3,211,916	+		CA265_RS12890	0.71	+0.3
3,211,917	-		CA265_RS12890	0.71	+1.6
3,211,918	+		CA265_RS12890	0.71	+1.4
3,211,919	-		CA265_RS12890	0.71	+1.7
3,211,986	-		CA265_RS12890	0.76	+1.7
3,211,990	-		CA265_RS12890	0.77	+1.7
3,211,996	+		CA265_RS12890	0.77	+1.7
3,211,996	+		CA265_RS12890	0.77	+0.3
3,212,006	-		CA265_RS12890	0.78	-0.3
3,212,006	-		CA265_RS12890	0.78	+1.3
3,212,099	+		CA265_RS12890	0.86	+1.8
3,212,101	+		CA265_RS12890	0.86	+0.1
3,212,101	+		CA265_RS12890	0.86	+1.9
3,212,102	-		CA265_RS12890	0.86	+1.9
3,212,145	+		CA265_RS12890	0.89	+1.9
3,212,289	+				-0.5
3,212,313	+				+0.3
3,212,332	+				+0.4
3,212,396	-		CA265_RS12895	0.13	+0.1
3,212,401	+		CA265_RS12895	0.14	-0.3
3,212,413	-		CA265_RS12895	0.16	+0.2
3,212,488	-		CA265_RS12895	0.28	-0.4
3,212,559	-		CA265_RS12895	0.39	+1.4
3,212,560	+		CA265_RS12895	0.39	-0.3
3,212,627	+		CA265_RS12895	0.50	+3.2
3,212,627	+		CA265_RS12895	0.50	-0.2
3,212,628	-		CA265_RS12895	0.50	-0.0
3,212,685	-		CA265_RS12895	0.59	+0.6
3,212,762	-		CA265_RS12895	0.71	+0.8
3,212,786	-		CA265_RS12895	0.75	+0.8
3,212,795	+		CA265_RS12895	0.76	-1.5
3,212,795	+		CA265_RS12895	0.76	-2.3
3,212,942	-				+0.0
3,212,953	+				-0.9
3,212,954	-				+0.6
3,212,954	-				+0.5
3,212,954	-				-0.6
3,212,954	-				-0.2
3,212,954	-				+0.7
3,212,954	-				+0.2
3,212,975	-				+0.1
3,212,979	-				-0.5
3,213,022	-				+0.4
3,213,023	+				+0.5
3,213,029	+				+0.4
3,213,029	+				+0.0
3,213,033	+				+0.3
3,213,121	+		CA265_RS12900	0.18	+0.9
3,213,190	+		CA265_RS12900	0.31	+0.1
3,213,212	-		CA265_RS12900	0.36	-0.7
3,213,236	+		CA265_RS12900	0.40	+0.2
3,213,236	+		CA265_RS12900	0.40	-1.4
3,213,245	+		CA265_RS12900	0.42	-0.6