Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS08770

Experiment: R2A with A22 0.04 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with A22 0.04 mg/ml
2,195,850	+		CA265_RS08760	0.78	+0.6
2,195,982	+		CA265_RS08760	0.84	+0.1
2,195,982	+		CA265_RS08760	0.84	-0.2
2,195,983	-		CA265_RS08760	0.84	+0.4
2,195,992	-		CA265_RS08760	0.85	-0.1
2,196,048	+		CA265_RS08760	0.87	-0.2
2,196,096	-		CA265_RS08760	0.89	-0.3
2,196,100	-		CA265_RS08760	0.89	-0.1
2,196,210	+				+0.7
2,196,211	-				-0.3
2,196,291	+				-0.4
2,196,292	-				-0.8
2,196,330	+				+0.0
2,196,333	-				+0.2
2,196,333	-				+1.5
2,196,351	-				-0.1
2,196,351	-				-0.6
2,196,353	-				-0.1
2,196,358	-				+0.4
2,196,420	-		CA265_RS08765	0.20	+0.3
2,196,430	+		CA265_RS08765	0.22	+0.6
2,196,569	+		CA265_RS08765	0.55	-0.2
2,196,595	+		CA265_RS08765	0.62	-0.9
2,196,608	+		CA265_RS08765	0.65	-0.1
2,196,617	+		CA265_RS08765	0.67	+0.0
2,196,632	+		CA265_RS08765	0.70	-1.1
2,196,644	-		CA265_RS08765	0.73	+1.1
2,196,667	+		CA265_RS08765	0.79	-0.5
2,196,668	-		CA265_RS08765	0.79	-0.1
2,196,706	+		CA265_RS08765	0.88	-1.0
2,196,743	-				-0.3
2,196,763	+				+0.2
2,196,768	+				-0.6
2,196,830	+				-0.5
2,196,909	-		CA265_RS08770	0.13	+0.5
2,196,960	+		CA265_RS08770	0.22	+0.8
2,197,003	+		CA265_RS08770	0.29	+1.1
2,197,088	-		CA265_RS08770	0.44	-0.1
2,197,184	+		CA265_RS08770	0.60	+0.8
2,197,272	+		CA265_RS08770	0.75	-0.2
2,197,357	+				-0.5
2,197,357	+				-0.5
2,197,413	+				+0.1
2,197,551	-				+1.0
2,197,750	-		CA265_RS08775	0.84	-0.4
2,197,854	-				-0.5
2,197,953	+				+0.2
2,197,954	-				+0.2
2,198,010	-				+0.8
2,198,061	-				-0.7
2,198,064	+				+0.0
2,198,065	-				+0.4
2,198,067	+				-1.7
2,198,093	+				-0.1
2,198,103	+				+0.3
2,198,164	+				+0.9
2,198,164	+				-1.0
2,198,164	+				+0.2
2,198,164	+				+0.2
2,198,165	-				+0.1
2,198,165	-				-1.1
2,198,186	+				+0.5
2,198,187	-				-0.7
2,198,250	+		CA265_RS08780	0.15	-1.0
2,198,276	-		CA265_RS08780	0.17	-0.7
2,198,289	+		CA265_RS08780	0.18	-1.6
2,198,289	+		CA265_RS08780	0.18	+1.0
2,198,293	+		CA265_RS08780	0.19	+0.2
2,198,293	+		CA265_RS08780	0.19	+0.3
2,198,338	-		CA265_RS08780	0.23	-0.8
2,198,338	-		CA265_RS08780	0.23	-1.2
2,198,343	+		CA265_RS08780	0.23	-0.1
2,198,344	-		CA265_RS08780	0.23	-1.5
2,198,389	-		CA265_RS08780	0.27	-1.1
2,198,390	+		CA265_RS08780	0.27	-1.2
2,198,394	+		CA265_RS08780	0.28	+0.9