Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS01460

Experiment: R2A with A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS01455 and CA265_RS01460 are separated by 54 nucleotidesCA265_RS01460 and CA265_RS01465 are separated by 338 nucleotidesCA265_RS01465 and CA265_RS01470 are separated by 262 nucleotides CA265_RS01455: CA265_RS01455 - MFS transporter, at 371,177 to 372,418 _RS01455 CA265_RS01460: CA265_RS01460 - hypothetical protein, at 372,473 to 372,841 _RS01460 CA265_RS01465: CA265_RS01465 - hypothetical protein, at 373,180 to 373,386 _RS01465 CA265_RS01470: CA265_RS01470 - tRNA-Ser, at 373,649 to 373,736 _RS01470 Position (kb) 372 373Strain fitness (log2 ratio) -3 -2 -1 0 1at 371.507 kb on + strand, within CA265_RS01455at 371.508 kb on - strand, within CA265_RS01455at 371.508 kb on - strand, within CA265_RS01455at 371.566 kb on + strand, within CA265_RS01455at 371.566 kb on + strand, within CA265_RS01455at 371.606 kb on - strand, within CA265_RS01455at 371.606 kb on - strand, within CA265_RS01455at 371.719 kb on - strand, within CA265_RS01455at 371.770 kb on + strand, within CA265_RS01455at 371.824 kb on + strand, within CA265_RS01455at 371.825 kb on - strand, within CA265_RS01455at 371.825 kb on - strand, within CA265_RS01455at 371.835 kb on + strand, within CA265_RS01455at 371.848 kb on + strand, within CA265_RS01455at 371.854 kb on + strand, within CA265_RS01455at 371.928 kb on + strand, within CA265_RS01455at 371.933 kb on - strand, within CA265_RS01455at 371.985 kb on + strand, within CA265_RS01455at 371.985 kb on + strand, within CA265_RS01455at 372.013 kb on - strand, within CA265_RS01455at 372.021 kb on - strand, within CA265_RS01455at 372.023 kb on + strand, within CA265_RS01455at 372.049 kb on - strand, within CA265_RS01455at 372.052 kb on + strand, within CA265_RS01455at 372.053 kb on - strand, within CA265_RS01455at 372.053 kb on - strand, within CA265_RS01455at 372.085 kb on - strand, within CA265_RS01455at 372.085 kb on - strand, within CA265_RS01455at 372.085 kb on - strand, within CA265_RS01455at 372.125 kb on + strand, within CA265_RS01455at 372.125 kb on + strand, within CA265_RS01455at 372.144 kb on + strand, within CA265_RS01455at 372.241 kb on + strand, within CA265_RS01455at 372.246 kb on + strand, within CA265_RS01455at 372.264 kb on + strand, within CA265_RS01455at 372.278 kb on + strand, within CA265_RS01455at 372.300 kb on + strandat 372.322 kb on + strandat 372.323 kb on - strandat 372.427 kb on - strandat 372.552 kb on + strand, within CA265_RS01460at 372.568 kb on + strand, within CA265_RS01460at 372.609 kb on + strand, within CA265_RS01460at 372.651 kb on - strand, within CA265_RS01460at 372.679 kb on + strand, within CA265_RS01460at 372.734 kb on + strand, within CA265_RS01460at 372.735 kb on - strand, within CA265_RS01460at 372.735 kb on - strand, within CA265_RS01460at 372.742 kb on - strand, within CA265_RS01460at 372.742 kb on - strand, within CA265_RS01460at 372.742 kb on - strand, within CA265_RS01460at 372.742 kb on - strand, within CA265_RS01460at 372.779 kb on - strand, within CA265_RS01460at 372.881 kb on - strandat 372.916 kb on - strandat 372.941 kb on + strandat 372.942 kb on - strandat 372.943 kb on + strandat 372.965 kb on + strandat 372.966 kb on - strandat 372.969 kb on - strandat 372.985 kb on - strandat 373.026 kb on - strandat 373.027 kb on + strandat 373.127 kb on - strandat 373.130 kb on + strandat 373.206 kb on + strand, within CA265_RS01465at 373.224 kb on + strand, within CA265_RS01465at 373.225 kb on - strand, within CA265_RS01465at 373.225 kb on - strand, within CA265_RS01465at 373.244 kb on + strand, within CA265_RS01465at 373.246 kb on + strand, within CA265_RS01465at 373.248 kb on + strand, within CA265_RS01465at 373.248 kb on + strand, within CA265_RS01465at 373.322 kb on - strand, within CA265_RS01465at 373.322 kb on - strand, within CA265_RS01465at 373.336 kb on - strand, within CA265_RS01465at 373.420 kb on + strandat 373.421 kb on - strandat 373.440 kb on + strandat 373.445 kb on + strandat 373.445 kb on + strandat 373.446 kb on - strandat 373.530 kb on + strandat 373.531 kb on - strandat 373.531 kb on - strandat 373.588 kb on - strandat 373.588 kb on - strandat 373.597 kb on + strandat 373.623 kb on - strandat 373.623 kb on - strandat 373.623 kb on - strandat 373.623 kb on - strandat 373.805 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with A22 0.04 mg/ml
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371,507 + CA265_RS01455 0.27 -0.9
371,508 - CA265_RS01455 0.27 +1.0
371,508 - CA265_RS01455 0.27 -0.5
371,566 + CA265_RS01455 0.31 +0.5
371,566 + CA265_RS01455 0.31 -0.6
371,606 - CA265_RS01455 0.35 +0.2
371,606 - CA265_RS01455 0.35 -0.2
371,719 - CA265_RS01455 0.44 +0.0
371,770 + CA265_RS01455 0.48 -0.3
371,824 + CA265_RS01455 0.52 +0.2
371,825 - CA265_RS01455 0.52 +0.3
371,825 - CA265_RS01455 0.52 +0.1
371,835 + CA265_RS01455 0.53 -0.4
371,848 + CA265_RS01455 0.54 +0.0
371,854 + CA265_RS01455 0.55 -1.5
371,928 + CA265_RS01455 0.60 +0.7
371,933 - CA265_RS01455 0.61 -0.4
371,985 + CA265_RS01455 0.65 -1.1
371,985 + CA265_RS01455 0.65 -0.4
372,013 - CA265_RS01455 0.67 -0.5
372,021 - CA265_RS01455 0.68 -1.6
372,023 + CA265_RS01455 0.68 -0.2
372,049 - CA265_RS01455 0.70 +0.1
372,052 + CA265_RS01455 0.70 -0.9
372,053 - CA265_RS01455 0.71 +0.3
372,053 - CA265_RS01455 0.71 +0.2
372,085 - CA265_RS01455 0.73 +0.4
372,085 - CA265_RS01455 0.73 +0.3
372,085 - CA265_RS01455 0.73 +0.6
372,125 + CA265_RS01455 0.76 -0.2
372,125 + CA265_RS01455 0.76 -0.0
372,144 + CA265_RS01455 0.78 -0.4
372,241 + CA265_RS01455 0.86 +0.3
372,246 + CA265_RS01455 0.86 -0.3
372,264 + CA265_RS01455 0.88 +0.2
372,278 + CA265_RS01455 0.89 -2.6
372,300 + -0.5
372,322 + +1.6
372,323 - +1.0
372,427 - +1.0
372,552 + CA265_RS01460 0.21 -2.0
372,568 + CA265_RS01460 0.26 -0.3
372,609 + CA265_RS01460 0.37 -0.3
372,651 - CA265_RS01460 0.48 -0.7
372,679 + CA265_RS01460 0.56 -0.8
372,734 + CA265_RS01460 0.71 +0.8
372,735 - CA265_RS01460 0.71 +0.6
372,735 - CA265_RS01460 0.71 +0.2
372,742 - CA265_RS01460 0.73 +0.5
372,742 - CA265_RS01460 0.73 +0.3
372,742 - CA265_RS01460 0.73 -0.1
372,742 - CA265_RS01460 0.73 +0.2
372,779 - CA265_RS01460 0.83 +1.7
372,881 - +0.3
372,916 - +0.1
372,941 + -0.1
372,942 - -0.1
372,943 + -0.8
372,965 + -1.2
372,966 - -0.5
372,969 - -0.6
372,985 - +0.3
373,026 - -0.0
373,027 + +0.3
373,127 - +0.2
373,130 + -0.6
373,206 + CA265_RS01465 0.13 +0.7
373,224 + CA265_RS01465 0.21 +0.5
373,225 - CA265_RS01465 0.22 +0.7
373,225 - CA265_RS01465 0.22 +0.4
373,244 + CA265_RS01465 0.31 -0.3
373,246 + CA265_RS01465 0.32 -0.1
373,248 + CA265_RS01465 0.33 -0.1
373,248 + CA265_RS01465 0.33 +0.8
373,322 - CA265_RS01465 0.69 +0.0
373,322 - CA265_RS01465 0.69 -0.5
373,336 - CA265_RS01465 0.75 +0.9
373,420 + +0.9
373,421 - +1.3
373,440 + +0.2
373,445 + -0.2
373,445 + -2.8
373,446 - +0.2
373,530 + +1.4
373,531 - -0.4
373,531 - -0.9
373,588 - +0.0
373,588 - +1.2
373,597 + -0.6
373,623 - -0.9
373,623 - +0.4
373,623 - +0.6
373,623 - +0.6
373,805 - -1.1

Or see this region's nucleotide sequence