Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_514

Experiment: Chlorite 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_513 and Ac3H11_514 are separated by 255 nucleotidesAc3H11_514 and Ac3H11_515 are separated by 378 nucleotides Ac3H11_513 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 211,926 to 213,914 _513 Ac3H11_514 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 214,170 to 215,948 _514 Ac3H11_515 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 216,327 to 218,090 _515 Position (kb) 214 215 216Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 214.080 kb on + strandat 214.081 kb on - strandat 214.103 kb on + strandat 214.104 kb on - strandat 214.296 kb on + strandat 214.296 kb on + strandat 214.296 kb on + strandat 214.297 kb on - strandat 214.297 kb on - strandat 214.297 kb on - strandat 214.347 kb on + strandat 214.347 kb on + strandat 214.347 kb on + strandat 214.347 kb on + strandat 214.347 kb on + strandat 214.347 kb on + strandat 214.348 kb on - strand, within Ac3H11_514at 214.348 kb on - strand, within Ac3H11_514at 214.348 kb on - strand, within Ac3H11_514at 214.348 kb on - strand, within Ac3H11_514at 214.348 kb on - strand, within Ac3H11_514at 214.348 kb on - strand, within Ac3H11_514at 214.348 kb on - strand, within Ac3H11_514at 214.348 kb on - strand, within Ac3H11_514at 214.348 kb on - strand, within Ac3H11_514at 214.348 kb on - strand, within Ac3H11_514at 214.348 kb on - strand, within Ac3H11_514at 214.464 kb on + strand, within Ac3H11_514at 214.580 kb on + strand, within Ac3H11_514at 214.580 kb on + strand, within Ac3H11_514at 214.580 kb on + strand, within Ac3H11_514at 214.581 kb on - strand, within Ac3H11_514at 214.581 kb on - strand, within Ac3H11_514at 214.581 kb on - strand, within Ac3H11_514at 214.599 kb on + strand, within Ac3H11_514at 214.599 kb on + strand, within Ac3H11_514at 214.599 kb on + strand, within Ac3H11_514at 214.600 kb on - strand, within Ac3H11_514at 214.600 kb on - strand, within Ac3H11_514at 214.600 kb on - strand, within Ac3H11_514at 214.600 kb on - strand, within Ac3H11_514at 214.600 kb on - strand, within Ac3H11_514at 214.618 kb on - strand, within Ac3H11_514at 214.618 kb on - strand, within Ac3H11_514at 214.618 kb on - strand, within Ac3H11_514at 214.693 kb on - strand, within Ac3H11_514at 214.693 kb on - strand, within Ac3H11_514at 214.693 kb on - strand, within Ac3H11_514at 215.466 kb on - strand, within Ac3H11_514at 215.946 kb on + strandat 215.947 kb on - strandat 216.080 kb on - strandat 216.080 kb on - strandat 216.104 kb on + strandat 216.105 kb on - strandat 216.130 kb on + strandat 216.131 kb on - strandat 216.131 kb on - strandat 216.299 kb on + strandat 216.299 kb on + strandat 216.299 kb on + strandat 216.299 kb on + strandat 216.299 kb on + strandat 216.299 kb on + strandat 216.299 kb on + strandat 216.299 kb on + strandat 216.300 kb on - strandat 216.300 kb on - strandat 216.300 kb on - strandat 216.300 kb on - strandat 216.300 kb on - strandat 216.300 kb on - strandat 216.303 kb on + strandat 216.303 kb on + strandat 216.303 kb on + strandat 216.303 kb on + strandat 216.304 kb on - strandat 216.304 kb on - strandat 216.304 kb on - strandat 216.304 kb on - strandat 216.304 kb on - strandat 216.304 kb on - strandat 216.304 kb on - strandat 216.305 kb on + strandat 216.305 kb on + strandat 216.305 kb on + strandat 216.306 kb on - strandat 216.306 kb on - strandat 216.306 kb on - strandat 216.306 kb on - strandat 216.306 kb on - strandat 216.559 kb on - strand, within Ac3H11_515at 216.693 kb on + strand, within Ac3H11_515at 216.693 kb on + strand, within Ac3H11_515at 216.693 kb on + strand, within Ac3H11_515at 216.693 kb on + strand, within Ac3H11_515at 216.693 kb on + strand, within Ac3H11_515at 216.693 kb on + strand, within Ac3H11_515at 216.693 kb on + strand, within Ac3H11_515at 216.694 kb on - strand, within Ac3H11_515at 216.694 kb on - strand, within Ac3H11_515at 216.789 kb on + strand, within Ac3H11_515at 216.790 kb on - strand, within Ac3H11_515at 216.790 kb on - strand, within Ac3H11_515at 216.790 kb on - strand, within Ac3H11_515

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.1 mM
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214,080 + +1.6
214,081 - -1.1
214,103 + +0.3
214,104 - -0.8
214,296 + -0.0
214,296 + +0.2
214,296 + -1.4
214,297 - +0.9
214,297 - +0.9
214,297 - +0.9
214,347 + -1.7
214,347 + +0.8
214,347 + +0.6
214,347 + +1.8
214,347 + -1.5
214,347 + +0.9
214,348 - Ac3H11_514 0.10 -0.1
214,348 - Ac3H11_514 0.10 -1.0
214,348 - Ac3H11_514 0.10 +0.2
214,348 - Ac3H11_514 0.10 -2.5
214,348 - Ac3H11_514 0.10 +1.6
214,348 - Ac3H11_514 0.10 +1.1
214,348 - Ac3H11_514 0.10 -0.4
214,348 - Ac3H11_514 0.10 -1.8
214,348 - Ac3H11_514 0.10 +1.8
214,348 - Ac3H11_514 0.10 +0.5
214,348 - Ac3H11_514 0.10 +0.3
214,464 + Ac3H11_514 0.17 -0.1
214,580 + Ac3H11_514 0.23 -0.5
214,580 + Ac3H11_514 0.23 -0.7
214,580 + Ac3H11_514 0.23 +0.7
214,581 - Ac3H11_514 0.23 +0.3
214,581 - Ac3H11_514 0.23 -0.3
214,581 - Ac3H11_514 0.23 -0.2
214,599 + Ac3H11_514 0.24 +0.5
214,599 + Ac3H11_514 0.24 +0.4
214,599 + Ac3H11_514 0.24 +0.2
214,600 - Ac3H11_514 0.24 +0.1
214,600 - Ac3H11_514 0.24 +0.7
214,600 - Ac3H11_514 0.24 +1.0
214,600 - Ac3H11_514 0.24 -2.5
214,600 - Ac3H11_514 0.24 +0.7
214,618 - Ac3H11_514 0.25 -0.2
214,618 - Ac3H11_514 0.25 -1.5
214,618 - Ac3H11_514 0.25 -2.4
214,693 - Ac3H11_514 0.29 +0.7
214,693 - Ac3H11_514 0.29 +2.1
214,693 - Ac3H11_514 0.29 -3.0
215,466 - Ac3H11_514 0.73 +1.2
215,946 + -2.1
215,947 - -0.4
216,080 - +0.2
216,080 - +1.2
216,104 + +0.3
216,105 - -1.0
216,130 + -2.1
216,131 - +0.8
216,131 - -0.8
216,299 + -0.3
216,299 + +0.2
216,299 + -2.2
216,299 + +0.4
216,299 + -0.1
216,299 + +0.4
216,299 + +0.2
216,299 + +0.4
216,300 - +0.8
216,300 - -1.5
216,300 - -1.4
216,300 - -0.3
216,300 - -3.8
216,300 - +0.9
216,303 + +0.2
216,303 + -0.3
216,303 + +0.6
216,303 + -1.2
216,304 - +0.2
216,304 - -1.7
216,304 - -0.4
216,304 - +0.3
216,304 - -2.0
216,304 - -2.2
216,304 - +2.0
216,305 + +1.6
216,305 + +0.6
216,305 + -0.7
216,306 - -1.6
216,306 - -0.5
216,306 - +0.1
216,306 - -0.8
216,306 - -1.9
216,559 - Ac3H11_515 0.13 -0.8
216,693 + Ac3H11_515 0.21 -0.3
216,693 + Ac3H11_515 0.21 -0.0
216,693 + Ac3H11_515 0.21 +1.3
216,693 + Ac3H11_515 0.21 -0.2
216,693 + Ac3H11_515 0.21 +1.1
216,693 + Ac3H11_515 0.21 +1.0
216,693 + Ac3H11_515 0.21 +0.7
216,694 - Ac3H11_515 0.21 -0.1
216,694 - Ac3H11_515 0.21 -0.8
216,789 + Ac3H11_515 0.26 -3.6
216,790 - Ac3H11_515 0.26 +0.6
216,790 - Ac3H11_515 0.26 -0.5
216,790 - Ac3H11_515 0.26 +1.1

Or see this region's nucleotide sequence