Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3399

Experiment: Chlorite 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3398 and Ac3H11_3399 are separated by 48 nucleotidesAc3H11_3399 and Ac3H11_3400 are separated by 32 nucleotides Ac3H11_3398 - Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF, at 75,151 to 76,404 _3398 Ac3H11_3399 - Probable transmembrane protein, at 76,453 to 77,250 _3399 Ac3H11_3400 - Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE, at 77,283 to 78,410 _3400 Position (kb) 76 77 78Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 75.479 kb on + strand, within Ac3H11_3398at 75.485 kb on + strand, within Ac3H11_3398at 75.485 kb on + strand, within Ac3H11_3398at 75.485 kb on + strand, within Ac3H11_3398at 75.485 kb on + strand, within Ac3H11_3398at 75.485 kb on + strand, within Ac3H11_3398at 75.485 kb on + strand, within Ac3H11_3398at 75.485 kb on + strand, within Ac3H11_3398at 75.485 kb on + strand, within Ac3H11_3398at 75.485 kb on + strand, within Ac3H11_3398at 75.485 kb on + strand, within Ac3H11_3398at 75.486 kb on - strand, within Ac3H11_3398at 75.486 kb on - strand, within Ac3H11_3398at 75.486 kb on - strand, within Ac3H11_3398at 75.486 kb on - strand, within Ac3H11_3398at 75.486 kb on - strand, within Ac3H11_3398at 75.486 kb on - strand, within Ac3H11_3398at 75.486 kb on - strand, within Ac3H11_3398at 75.486 kb on - strand, within Ac3H11_3398at 75.486 kb on - strand, within Ac3H11_3398at 75.486 kb on - strand, within Ac3H11_3398at 75.486 kb on - strand, within Ac3H11_3398at 75.486 kb on - strand, within Ac3H11_3398at 75.486 kb on - strand, within Ac3H11_3398at 75.605 kb on + strand, within Ac3H11_3398at 75.605 kb on + strand, within Ac3H11_3398at 75.635 kb on + strand, within Ac3H11_3398at 76.133 kb on + strand, within Ac3H11_3398at 76.134 kb on - strand, within Ac3H11_3398at 76.134 kb on - strand, within Ac3H11_3398at 76.247 kb on + strand, within Ac3H11_3398at 76.247 kb on + strand, within Ac3H11_3398at 76.247 kb on + strand, within Ac3H11_3398at 76.247 kb on + strand, within Ac3H11_3398at 76.248 kb on - strand, within Ac3H11_3398at 76.248 kb on - strand, within Ac3H11_3398at 76.292 kb on + strandat 76.293 kb on - strandat 76.293 kb on - strandat 76.293 kb on - strandat 76.293 kb on - strandat 77.044 kb on + strand, within Ac3H11_3399at 77.044 kb on + strand, within Ac3H11_3399at 77.044 kb on + strand, within Ac3H11_3399at 77.045 kb on - strand, within Ac3H11_3399at 77.045 kb on - strand, within Ac3H11_3399at 77.045 kb on - strand, within Ac3H11_3399at 77.045 kb on - strand, within Ac3H11_3399at 77.045 kb on - strand, within Ac3H11_3399at 77.126 kb on + strand, within Ac3H11_3399at 77.126 kb on + strand, within Ac3H11_3399at 77.126 kb on + strand, within Ac3H11_3399at 77.126 kb on + strand, within Ac3H11_3399at 77.126 kb on + strand, within Ac3H11_3399at 77.127 kb on - strand, within Ac3H11_3399at 77.127 kb on - strand, within Ac3H11_3399at 77.127 kb on - strand, within Ac3H11_3399at 77.127 kb on - strand, within Ac3H11_3399at 77.127 kb on - strand, within Ac3H11_3399at 77.284 kb on + strandat 77.284 kb on + strandat 77.424 kb on + strand, within Ac3H11_3400at 77.722 kb on - strand, within Ac3H11_3400at 77.722 kb on - strand, within Ac3H11_3400at 77.752 kb on + strand, within Ac3H11_3400at 77.752 kb on + strand, within Ac3H11_3400at 77.752 kb on + strand, within Ac3H11_3400at 77.752 kb on + strand, within Ac3H11_3400at 77.752 kb on + strand, within Ac3H11_3400at 77.752 kb on + strand, within Ac3H11_3400at 77.752 kb on + strand, within Ac3H11_3400at 77.752 kb on + strand, within Ac3H11_3400at 77.752 kb on + strand, within Ac3H11_3400at 77.753 kb on - strand, within Ac3H11_3400at 77.753 kb on - strand, within Ac3H11_3400at 77.753 kb on - strand, within Ac3H11_3400at 77.753 kb on - strand, within Ac3H11_3400at 78.049 kb on + strand, within Ac3H11_3400at 78.049 kb on + strand, within Ac3H11_3400

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.1 mM
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75,479 + Ac3H11_3398 0.26 +0.4
75,485 + Ac3H11_3398 0.27 -1.0
75,485 + Ac3H11_3398 0.27 +1.3
75,485 + Ac3H11_3398 0.27 +0.5
75,485 + Ac3H11_3398 0.27 +0.1
75,485 + Ac3H11_3398 0.27 +1.4
75,485 + Ac3H11_3398 0.27 +1.1
75,485 + Ac3H11_3398 0.27 +0.5
75,485 + Ac3H11_3398 0.27 +3.1
75,485 + Ac3H11_3398 0.27 -1.7
75,485 + Ac3H11_3398 0.27 +0.0
75,486 - Ac3H11_3398 0.27 +0.9
75,486 - Ac3H11_3398 0.27 -0.5
75,486 - Ac3H11_3398 0.27 -0.8
75,486 - Ac3H11_3398 0.27 -1.8
75,486 - Ac3H11_3398 0.27 -1.7
75,486 - Ac3H11_3398 0.27 -1.7
75,486 - Ac3H11_3398 0.27 +0.1
75,486 - Ac3H11_3398 0.27 -3.3
75,486 - Ac3H11_3398 0.27 -1.4
75,486 - Ac3H11_3398 0.27 -0.2
75,486 - Ac3H11_3398 0.27 +1.4
75,486 - Ac3H11_3398 0.27 +2.2
75,486 - Ac3H11_3398 0.27 +0.9
75,605 + Ac3H11_3398 0.36 +1.1
75,605 + Ac3H11_3398 0.36 +1.2
75,635 + Ac3H11_3398 0.39 +1.4
76,133 + Ac3H11_3398 0.78 +0.5
76,134 - Ac3H11_3398 0.78 -0.8
76,134 - Ac3H11_3398 0.78 +2.6
76,247 + Ac3H11_3398 0.87 -1.0
76,247 + Ac3H11_3398 0.87 -1.1
76,247 + Ac3H11_3398 0.87 +1.4
76,247 + Ac3H11_3398 0.87 +1.7
76,248 - Ac3H11_3398 0.87 -3.2
76,248 - Ac3H11_3398 0.87 +2.8
76,292 + -1.0
76,293 - +0.2
76,293 - -1.5
76,293 - -0.7
76,293 - +1.1
77,044 + Ac3H11_3399 0.74 +0.8
77,044 + Ac3H11_3399 0.74 +0.9
77,044 + Ac3H11_3399 0.74 -2.3
77,045 - Ac3H11_3399 0.74 +0.9
77,045 - Ac3H11_3399 0.74 -2.2
77,045 - Ac3H11_3399 0.74 +1.0
77,045 - Ac3H11_3399 0.74 +0.1
77,045 - Ac3H11_3399 0.74 +2.0
77,126 + Ac3H11_3399 0.84 -1.2
77,126 + Ac3H11_3399 0.84 +0.9
77,126 + Ac3H11_3399 0.84 +2.7
77,126 + Ac3H11_3399 0.84 +1.1
77,126 + Ac3H11_3399 0.84 -2.6
77,127 - Ac3H11_3399 0.84 -1.1
77,127 - Ac3H11_3399 0.84 -4.0
77,127 - Ac3H11_3399 0.84 -1.5
77,127 - Ac3H11_3399 0.84 +0.2
77,127 - Ac3H11_3399 0.84 +0.5
77,284 + -0.7
77,284 + -0.0
77,424 + Ac3H11_3400 0.12 +1.4
77,722 - Ac3H11_3400 0.39 -2.5
77,722 - Ac3H11_3400 0.39 +1.1
77,752 + Ac3H11_3400 0.42 +1.3
77,752 + Ac3H11_3400 0.42 -0.4
77,752 + Ac3H11_3400 0.42 -3.6
77,752 + Ac3H11_3400 0.42 -4.2
77,752 + Ac3H11_3400 0.42 -0.2
77,752 + Ac3H11_3400 0.42 +1.4
77,752 + Ac3H11_3400 0.42 +0.4
77,752 + Ac3H11_3400 0.42 +1.1
77,752 + Ac3H11_3400 0.42 -2.2
77,753 - Ac3H11_3400 0.42 +0.4
77,753 - Ac3H11_3400 0.42 -1.7
77,753 - Ac3H11_3400 0.42 +0.9
77,753 - Ac3H11_3400 0.42 +0.7
78,049 + Ac3H11_3400 0.68 -1.7
78,049 + Ac3H11_3400 0.68 +0.0

Or see this region's nucleotide sequence