Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3152

Experiment: Chlorite 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3150 and Ac3H11_3151 are separated by 129 nucleotidesAc3H11_3151 and Ac3H11_3152 are separated by 35 nucleotidesAc3H11_3152 and Ac3H11_3153 are separated by 18 nucleotides Ac3H11_3150 - Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99), at 51,506 to 54,106 _3150 Ac3H11_3151 - Probable signal peptide protein, at 54,236 to 54,892 _3151 Ac3H11_3152 - Citrate lyase beta chain (EC 4.1.3.6), at 54,928 to 56,022 _3152 Ac3H11_3153 - Malate dehydrogenase (EC 1.1.1.37), at 56,041 to 57,027 _3153 Position (kb) 54 55 56 57Strain fitness (log2 ratio) -2 -1 0 1at 54.129 kb on - strandat 54.129 kb on - strandat 54.238 kb on - strandat 54.460 kb on - strand, within Ac3H11_3151at 54.907 kb on - strandat 55.023 kb on - strandat 55.197 kb on - strand, within Ac3H11_3152at 55.197 kb on - strand, within Ac3H11_3152at 55.857 kb on - strand, within Ac3H11_3152at 55.857 kb on - strand, within Ac3H11_3152

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.1 mM
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54,129 - +0.1
54,129 - -0.7
54,238 - +1.0
54,460 - Ac3H11_3151 0.34 -2.2
54,907 - +0.4
55,023 - -2.7
55,197 - Ac3H11_3152 0.25 +0.8
55,197 - Ac3H11_3152 0.25 -0.3
55,857 - Ac3H11_3152 0.85 -0.8
55,857 - Ac3H11_3152 0.85 -1.4

Or see this region's nucleotide sequence