Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3134

Experiment: Chlorite 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3132 and Ac3H11_3133 are separated by 18 nucleotidesAc3H11_3133 and Ac3H11_3134 overlap by 4 nucleotidesAc3H11_3134 and Ac3H11_3135 are separated by 91 nucleotides Ac3H11_3132 - 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25), at 32,808 to 33,929 _3132 Ac3H11_3133 - 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78), at 33,948 to 34,412 _3133 Ac3H11_3134 - Transcription termination protein NusB, at 34,409 to 34,951 _3134 Ac3H11_3135 - Aspartate aminotransferase (EC 2.6.1.1), at 35,043 to 36,227 _3135 Position (kb) 34 35Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 33.666 kb on + strand, within Ac3H11_3132at 33.666 kb on + strand, within Ac3H11_3132at 33.666 kb on + strand, within Ac3H11_3132at 33.801 kb on + strand, within Ac3H11_3132at 33.801 kb on + strand, within Ac3H11_3132at 33.941 kb on + strandat 33.947 kb on + strandat 34.218 kb on + strand, within Ac3H11_3133at 34.218 kb on + strand, within Ac3H11_3133at 34.218 kb on + strand, within Ac3H11_3133at 34.278 kb on + strand, within Ac3H11_3133at 35.082 kb on + strandat 35.082 kb on + strandat 35.082 kb on + strandat 35.082 kb on + strandat 35.082 kb on + strandat 35.082 kb on + strandat 35.082 kb on + strandat 35.082 kb on + strandat 35.083 kb on - strandat 35.083 kb on - strandat 35.083 kb on - strandat 35.083 kb on - strandat 35.083 kb on - strandat 35.083 kb on - strandat 35.083 kb on - strandat 35.083 kb on - strandat 35.083 kb on - strandat 35.083 kb on - strandat 35.241 kb on + strand, within Ac3H11_3135at 35.241 kb on + strand, within Ac3H11_3135at 35.241 kb on + strand, within Ac3H11_3135at 35.241 kb on + strand, within Ac3H11_3135at 35.242 kb on - strand, within Ac3H11_3135at 35.242 kb on - strand, within Ac3H11_3135at 35.285 kb on + strand, within Ac3H11_3135at 35.285 kb on + strand, within Ac3H11_3135at 35.285 kb on + strand, within Ac3H11_3135at 35.285 kb on + strand, within Ac3H11_3135at 35.285 kb on + strand, within Ac3H11_3135at 35.286 kb on - strand, within Ac3H11_3135at 35.286 kb on - strand, within Ac3H11_3135at 35.286 kb on - strand, within Ac3H11_3135at 35.293 kb on - strand, within Ac3H11_3135at 35.293 kb on - strand, within Ac3H11_3135at 35.293 kb on - strand, within Ac3H11_3135at 35.424 kb on + strand, within Ac3H11_3135at 35.424 kb on + strand, within Ac3H11_3135at 35.424 kb on + strand, within Ac3H11_3135at 35.424 kb on + strand, within Ac3H11_3135at 35.425 kb on - strand, within Ac3H11_3135at 35.425 kb on - strand, within Ac3H11_3135at 35.507 kb on + strand, within Ac3H11_3135at 35.508 kb on - strand, within Ac3H11_3135at 35.508 kb on - strand, within Ac3H11_3135at 35.508 kb on - strand, within Ac3H11_3135at 35.667 kb on + strand, within Ac3H11_3135at 35.667 kb on + strand, within Ac3H11_3135at 35.667 kb on + strand, within Ac3H11_3135at 35.667 kb on + strand, within Ac3H11_3135at 35.667 kb on + strand, within Ac3H11_3135at 35.667 kb on + strand, within Ac3H11_3135at 35.667 kb on + strand, within Ac3H11_3135at 35.667 kb on + strand, within Ac3H11_3135at 35.667 kb on + strand, within Ac3H11_3135at 35.667 kb on + strand, within Ac3H11_3135at 35.667 kb on + strand, within Ac3H11_3135at 35.668 kb on - strand, within Ac3H11_3135at 35.668 kb on - strand, within Ac3H11_3135at 35.668 kb on - strand, within Ac3H11_3135at 35.668 kb on - strand, within Ac3H11_3135at 35.668 kb on - strand, within Ac3H11_3135at 35.668 kb on - strand, within Ac3H11_3135at 35.668 kb on - strand, within Ac3H11_3135at 35.668 kb on - strand, within Ac3H11_3135at 35.671 kb on + strand, within Ac3H11_3135at 35.671 kb on + strand, within Ac3H11_3135at 35.671 kb on + strand, within Ac3H11_3135at 35.671 kb on + strand, within Ac3H11_3135at 35.671 kb on + strand, within Ac3H11_3135at 35.671 kb on + strand, within Ac3H11_3135at 35.672 kb on - strand, within Ac3H11_3135at 35.672 kb on - strand, within Ac3H11_3135at 35.672 kb on - strand, within Ac3H11_3135at 35.683 kb on - strand, within Ac3H11_3135at 35.754 kb on + strand, within Ac3H11_3135at 35.754 kb on + strand, within Ac3H11_3135at 35.755 kb on - strand, within Ac3H11_3135at 35.868 kb on + strand, within Ac3H11_3135at 35.868 kb on + strand, within Ac3H11_3135at 35.910 kb on + strand, within Ac3H11_3135at 35.911 kb on - strand, within Ac3H11_3135at 35.911 kb on - strand, within Ac3H11_3135

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.1 mM
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33,666 + Ac3H11_3132 0.76 +0.5
33,666 + Ac3H11_3132 0.76 -0.0
33,666 + Ac3H11_3132 0.76 +1.4
33,801 + Ac3H11_3132 0.89 +1.4
33,801 + Ac3H11_3132 0.89 +0.4
33,941 + +2.0
33,947 + -1.0
34,218 + Ac3H11_3133 0.58 -2.9
34,218 + Ac3H11_3133 0.58 +0.8
34,218 + Ac3H11_3133 0.58 +1.7
34,278 + Ac3H11_3133 0.71 -1.1
35,082 + +0.4
35,082 + +1.2
35,082 + +1.2
35,082 + -1.0
35,082 + +0.2
35,082 + +0.6
35,082 + -0.6
35,082 + -0.3
35,083 - +1.7
35,083 - -0.6
35,083 - -0.4
35,083 - -1.3
35,083 - -1.0
35,083 - -0.3
35,083 - +2.0
35,083 - -3.1
35,083 - -0.1
35,083 - +0.3
35,241 + Ac3H11_3135 0.17 -1.6
35,241 + Ac3H11_3135 0.17 +0.4
35,241 + Ac3H11_3135 0.17 -0.4
35,241 + Ac3H11_3135 0.17 +0.0
35,242 - Ac3H11_3135 0.17 +0.1
35,242 - Ac3H11_3135 0.17 -0.3
35,285 + Ac3H11_3135 0.20 -2.5
35,285 + Ac3H11_3135 0.20 -2.3
35,285 + Ac3H11_3135 0.20 -0.1
35,285 + Ac3H11_3135 0.20 +0.2
35,285 + Ac3H11_3135 0.20 -0.1
35,286 - Ac3H11_3135 0.21 +0.9
35,286 - Ac3H11_3135 0.21 -1.5
35,286 - Ac3H11_3135 0.21 +1.9
35,293 - Ac3H11_3135 0.21 -0.5
35,293 - Ac3H11_3135 0.21 -0.8
35,293 - Ac3H11_3135 0.21 -0.6
35,424 + Ac3H11_3135 0.32 -1.9
35,424 + Ac3H11_3135 0.32 -0.5
35,424 + Ac3H11_3135 0.32 +1.1
35,424 + Ac3H11_3135 0.32 +0.6
35,425 - Ac3H11_3135 0.32 -0.5
35,425 - Ac3H11_3135 0.32 -1.4
35,507 + Ac3H11_3135 0.39 -0.1
35,508 - Ac3H11_3135 0.39 -3.6
35,508 - Ac3H11_3135 0.39 +0.8
35,508 - Ac3H11_3135 0.39 +0.9
35,667 + Ac3H11_3135 0.53 +1.5
35,667 + Ac3H11_3135 0.53 +0.7
35,667 + Ac3H11_3135 0.53 +0.8
35,667 + Ac3H11_3135 0.53 +0.1
35,667 + Ac3H11_3135 0.53 +1.2
35,667 + Ac3H11_3135 0.53 -0.3
35,667 + Ac3H11_3135 0.53 -0.0
35,667 + Ac3H11_3135 0.53 +0.7
35,667 + Ac3H11_3135 0.53 +0.6
35,667 + Ac3H11_3135 0.53 +1.9
35,667 + Ac3H11_3135 0.53 -0.4
35,668 - Ac3H11_3135 0.53 +0.6
35,668 - Ac3H11_3135 0.53 -3.1
35,668 - Ac3H11_3135 0.53 +0.1
35,668 - Ac3H11_3135 0.53 -2.9
35,668 - Ac3H11_3135 0.53 -0.5
35,668 - Ac3H11_3135 0.53 +2.1
35,668 - Ac3H11_3135 0.53 +1.0
35,668 - Ac3H11_3135 0.53 -1.3
35,671 + Ac3H11_3135 0.53 +0.5
35,671 + Ac3H11_3135 0.53 +0.1
35,671 + Ac3H11_3135 0.53 +2.2
35,671 + Ac3H11_3135 0.53 -0.6
35,671 + Ac3H11_3135 0.53 +1.7
35,671 + Ac3H11_3135 0.53 -2.4
35,672 - Ac3H11_3135 0.53 +0.0
35,672 - Ac3H11_3135 0.53 -1.4
35,672 - Ac3H11_3135 0.53 +0.6
35,683 - Ac3H11_3135 0.54 -2.9
35,754 + Ac3H11_3135 0.60 -0.5
35,754 + Ac3H11_3135 0.60 +1.4
35,755 - Ac3H11_3135 0.60 +1.1
35,868 + Ac3H11_3135 0.70 +1.1
35,868 + Ac3H11_3135 0.70 -3.0
35,910 + Ac3H11_3135 0.73 +0.5
35,911 - Ac3H11_3135 0.73 +1.0
35,911 - Ac3H11_3135 0.73 -1.5

Or see this region's nucleotide sequence