Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3090

Experiment: Chlorite 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3089 and Ac3H11_3090 are separated by 51 nucleotidesAc3H11_3090 and Ac3H11_3091 overlap by 4 nucleotidesAc3H11_3091 and Ac3H11_3092 are separated by 37 nucleotides Ac3H11_3089 - Benzaldehyde dehydrogenase, at 114,016 to 115,578 _3089 Ac3H11_3090 - Benzoate-CoA ligase (EC 6.2.1.25), at 115,630 to 117,186 _3090 Ac3H11_3091 - benzoate degradation ring-cleavage hydrolase, at 117,183 to 117,989 _3091 Ac3H11_3092 - transcriptional regulator, Crp/Fnr family, at 118,027 to 118,719 _3092 Position (kb) 115 116 117 118Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 114.941 kb on - strand, within Ac3H11_3089at 114.941 kb on - strand, within Ac3H11_3089at 114.941 kb on - strand, within Ac3H11_3089at 115.312 kb on + strand, within Ac3H11_3089at 115.312 kb on + strand, within Ac3H11_3089at 115.312 kb on + strand, within Ac3H11_3089at 115.312 kb on + strand, within Ac3H11_3089at 115.313 kb on - strand, within Ac3H11_3089at 115.313 kb on - strand, within Ac3H11_3089at 115.313 kb on - strand, within Ac3H11_3089at 115.507 kb on + strandat 115.507 kb on + strandat 115.508 kb on - strandat 115.508 kb on - strandat 115.606 kb on + strandat 115.607 kb on - strandat 115.708 kb on + strandat 115.709 kb on - strandat 115.709 kb on - strandat 115.709 kb on - strandat 115.709 kb on - strandat 115.735 kb on + strandat 115.736 kb on - strandat 115.918 kb on + strand, within Ac3H11_3090at 115.918 kb on + strand, within Ac3H11_3090at 115.918 kb on + strand, within Ac3H11_3090at 115.919 kb on - strand, within Ac3H11_3090at 115.919 kb on - strand, within Ac3H11_3090at 115.924 kb on + strand, within Ac3H11_3090at 115.924 kb on + strand, within Ac3H11_3090at 115.924 kb on + strand, within Ac3H11_3090at 115.924 kb on + strand, within Ac3H11_3090at 115.924 kb on + strand, within Ac3H11_3090at 115.924 kb on + strand, within Ac3H11_3090at 115.925 kb on - strand, within Ac3H11_3090at 115.925 kb on - strand, within Ac3H11_3090at 115.925 kb on - strand, within Ac3H11_3090at 115.925 kb on - strand, within Ac3H11_3090at 115.925 kb on - strand, within Ac3H11_3090at 115.925 kb on - strand, within Ac3H11_3090at 115.925 kb on - strand, within Ac3H11_3090at 115.925 kb on - strand, within Ac3H11_3090at 115.925 kb on - strand, within Ac3H11_3090at 115.925 kb on - strand, within Ac3H11_3090at 115.925 kb on - strand, within Ac3H11_3090at 116.152 kb on + strand, within Ac3H11_3090at 116.152 kb on + strand, within Ac3H11_3090at 116.227 kb on + strand, within Ac3H11_3090at 116.227 kb on + strand, within Ac3H11_3090at 116.228 kb on - strand, within Ac3H11_3090at 116.228 kb on - strand, within Ac3H11_3090at 116.228 kb on - strand, within Ac3H11_3090at 116.287 kb on + strand, within Ac3H11_3090at 116.288 kb on - strand, within Ac3H11_3090at 116.288 kb on - strand, within Ac3H11_3090at 116.288 kb on - strand, within Ac3H11_3090at 116.665 kb on + strand, within Ac3H11_3090at 116.728 kb on + strand, within Ac3H11_3090at 116.728 kb on + strand, within Ac3H11_3090at 116.728 kb on + strand, within Ac3H11_3090at 116.728 kb on + strand, within Ac3H11_3090at 116.728 kb on + strand, within Ac3H11_3090at 116.728 kb on + strand, within Ac3H11_3090at 116.728 kb on + strand, within Ac3H11_3090at 116.728 kb on + strand, within Ac3H11_3090at 116.729 kb on - strand, within Ac3H11_3090at 116.729 kb on - strand, within Ac3H11_3090at 116.729 kb on - strand, within Ac3H11_3090at 116.729 kb on - strand, within Ac3H11_3090at 116.729 kb on - strand, within Ac3H11_3090at 116.758 kb on + strand, within Ac3H11_3090at 116.824 kb on + strand, within Ac3H11_3090at 116.824 kb on + strand, within Ac3H11_3090at 116.824 kb on + strand, within Ac3H11_3090at 116.824 kb on + strand, within Ac3H11_3090at 116.824 kb on + strand, within Ac3H11_3090at 116.824 kb on + strand, within Ac3H11_3090at 116.824 kb on + strand, within Ac3H11_3090at 116.824 kb on + strand, within Ac3H11_3090at 116.824 kb on + strand, within Ac3H11_3090at 116.824 kb on + strand, within Ac3H11_3090at 116.824 kb on + strand, within Ac3H11_3090at 116.824 kb on + strand, within Ac3H11_3090at 116.825 kb on - strand, within Ac3H11_3090at 116.825 kb on - strand, within Ac3H11_3090at 116.825 kb on - strand, within Ac3H11_3090at 116.825 kb on - strand, within Ac3H11_3090at 116.825 kb on - strand, within Ac3H11_3090at 116.845 kb on + strand, within Ac3H11_3090at 116.845 kb on + strand, within Ac3H11_3090at 116.845 kb on + strand, within Ac3H11_3090at 116.846 kb on - strand, within Ac3H11_3090at 116.848 kb on + strand, within Ac3H11_3090at 116.848 kb on + strand, within Ac3H11_3090at 116.848 kb on + strand, within Ac3H11_3090at 116.848 kb on + strand, within Ac3H11_3090at 116.848 kb on + strand, within Ac3H11_3090at 116.849 kb on - strand, within Ac3H11_3090at 116.849 kb on - strand, within Ac3H11_3090at 116.849 kb on - strand, within Ac3H11_3090at 116.849 kb on - strand, within Ac3H11_3090at 116.854 kb on + strand, within Ac3H11_3090at 116.854 kb on + strand, within Ac3H11_3090at 116.896 kb on + strand, within Ac3H11_3090at 116.896 kb on + strand, within Ac3H11_3090at 116.896 kb on + strand, within Ac3H11_3090at 116.896 kb on + strand, within Ac3H11_3090at 116.896 kb on + strand, within Ac3H11_3090at 116.896 kb on + strand, within Ac3H11_3090at 116.896 kb on + strand, within Ac3H11_3090at 116.896 kb on + strand, within Ac3H11_3090at 116.896 kb on + strand, within Ac3H11_3090at 116.896 kb on + strand, within Ac3H11_3090at 116.896 kb on + strand, within Ac3H11_3090at 116.896 kb on + strand, within Ac3H11_3090at 116.896 kb on + strand, within Ac3H11_3090at 116.896 kb on + strand, within Ac3H11_3090at 116.896 kb on + strand, within Ac3H11_3090at 116.896 kb on + strand, within Ac3H11_3090at 116.896 kb on + strand, within Ac3H11_3090at 116.896 kb on + strand, within Ac3H11_3090at 116.896 kb on + strand, within Ac3H11_3090at 116.897 kb on - strand, within Ac3H11_3090at 116.897 kb on - strand, within Ac3H11_3090at 116.897 kb on - strand, within Ac3H11_3090at 116.897 kb on - strand, within Ac3H11_3090at 116.897 kb on - strand, within Ac3H11_3090at 116.897 kb on - strand, within Ac3H11_3090at 116.897 kb on - strand, within Ac3H11_3090at 116.897 kb on - strand, within Ac3H11_3090at 117.079 kb on + strandat 117.079 kb on + strandat 117.079 kb on + strandat 117.079 kb on + strandat 117.079 kb on + strandat 117.079 kb on + strandat 117.080 kb on - strandat 117.080 kb on - strandat 117.085 kb on + strandat 117.085 kb on + strandat 117.085 kb on + strandat 117.086 kb on - strandat 117.253 kb on - strandat 117.399 kb on + strand, within Ac3H11_3091at 117.601 kb on + strand, within Ac3H11_3091at 117.663 kb on + strand, within Ac3H11_3091at 117.664 kb on - strand, within Ac3H11_3091at 117.838 kb on - strand, within Ac3H11_3091at 117.838 kb on - strand, within Ac3H11_3091at 117.856 kb on + strand, within Ac3H11_3091at 117.856 kb on + strand, within Ac3H11_3091at 117.856 kb on + strand, within Ac3H11_3091at 117.857 kb on - strand, within Ac3H11_3091

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.1 mM
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114,941 - Ac3H11_3089 0.59 -0.6
114,941 - Ac3H11_3089 0.59 -1.6
114,941 - Ac3H11_3089 0.59 -0.6
115,312 + Ac3H11_3089 0.83 +0.7
115,312 + Ac3H11_3089 0.83 +1.6
115,312 + Ac3H11_3089 0.83 +1.2
115,312 + Ac3H11_3089 0.83 -1.7
115,313 - Ac3H11_3089 0.83 +1.1
115,313 - Ac3H11_3089 0.83 +1.4
115,313 - Ac3H11_3089 0.83 -0.9
115,507 + -1.5
115,507 + -0.9
115,508 - -0.8
115,508 - -0.2
115,606 + -0.9
115,607 - -0.1
115,708 + +0.8
115,709 - -0.5
115,709 - -0.7
115,709 - +0.2
115,709 - +0.9
115,735 + -0.2
115,736 - +0.1
115,918 + Ac3H11_3090 0.18 +0.3
115,918 + Ac3H11_3090 0.18 -0.6
115,918 + Ac3H11_3090 0.18 -2.0
115,919 - Ac3H11_3090 0.19 -0.7
115,919 - Ac3H11_3090 0.19 +1.5
115,924 + Ac3H11_3090 0.19 -0.1
115,924 + Ac3H11_3090 0.19 +0.5
115,924 + Ac3H11_3090 0.19 +0.6
115,924 + Ac3H11_3090 0.19 -0.3
115,924 + Ac3H11_3090 0.19 +0.5
115,924 + Ac3H11_3090 0.19 -0.3
115,925 - Ac3H11_3090 0.19 +0.1
115,925 - Ac3H11_3090 0.19 -2.0
115,925 - Ac3H11_3090 0.19 +0.6
115,925 - Ac3H11_3090 0.19 +0.8
115,925 - Ac3H11_3090 0.19 -1.2
115,925 - Ac3H11_3090 0.19 +1.4
115,925 - Ac3H11_3090 0.19 -1.5
115,925 - Ac3H11_3090 0.19 +0.3
115,925 - Ac3H11_3090 0.19 +0.2
115,925 - Ac3H11_3090 0.19 +0.3
115,925 - Ac3H11_3090 0.19 +0.6
116,152 + Ac3H11_3090 0.34 +0.7
116,152 + Ac3H11_3090 0.34 +0.4
116,227 + Ac3H11_3090 0.38 +0.3
116,227 + Ac3H11_3090 0.38 +0.3
116,228 - Ac3H11_3090 0.38 +0.7
116,228 - Ac3H11_3090 0.38 -0.2
116,228 - Ac3H11_3090 0.38 +0.5
116,287 + Ac3H11_3090 0.42 -0.0
116,288 - Ac3H11_3090 0.42 -1.4
116,288 - Ac3H11_3090 0.42 +0.3
116,288 - Ac3H11_3090 0.42 -4.2
116,665 + Ac3H11_3090 0.66 -0.2
116,728 + Ac3H11_3090 0.71 -0.8
116,728 + Ac3H11_3090 0.71 -1.2
116,728 + Ac3H11_3090 0.71 +0.8
116,728 + Ac3H11_3090 0.71 +0.6
116,728 + Ac3H11_3090 0.71 +0.0
116,728 + Ac3H11_3090 0.71 +1.8
116,728 + Ac3H11_3090 0.71 -0.5
116,728 + Ac3H11_3090 0.71 -0.2
116,729 - Ac3H11_3090 0.71 -3.0
116,729 - Ac3H11_3090 0.71 -1.1
116,729 - Ac3H11_3090 0.71 -0.6
116,729 - Ac3H11_3090 0.71 -0.5
116,729 - Ac3H11_3090 0.71 +0.3
116,758 + Ac3H11_3090 0.72 +0.1
116,824 + Ac3H11_3090 0.77 -0.5
116,824 + Ac3H11_3090 0.77 +0.6
116,824 + Ac3H11_3090 0.77 -0.2
116,824 + Ac3H11_3090 0.77 +0.2
116,824 + Ac3H11_3090 0.77 +0.2
116,824 + Ac3H11_3090 0.77 -1.8
116,824 + Ac3H11_3090 0.77 +0.1
116,824 + Ac3H11_3090 0.77 -1.7
116,824 + Ac3H11_3090 0.77 +1.3
116,824 + Ac3H11_3090 0.77 -0.1
116,824 + Ac3H11_3090 0.77 -1.9
116,824 + Ac3H11_3090 0.77 -1.0
116,825 - Ac3H11_3090 0.77 -2.4
116,825 - Ac3H11_3090 0.77 -2.2
116,825 - Ac3H11_3090 0.77 +1.6
116,825 - Ac3H11_3090 0.77 +0.5
116,825 - Ac3H11_3090 0.77 +1.3
116,845 + Ac3H11_3090 0.78 -1.2
116,845 + Ac3H11_3090 0.78 +0.9
116,845 + Ac3H11_3090 0.78 -0.2
116,846 - Ac3H11_3090 0.78 -2.5
116,848 + Ac3H11_3090 0.78 -3.3
116,848 + Ac3H11_3090 0.78 -0.1
116,848 + Ac3H11_3090 0.78 +0.2
116,848 + Ac3H11_3090 0.78 -0.2
116,848 + Ac3H11_3090 0.78 -2.6
116,849 - Ac3H11_3090 0.78 -1.3
116,849 - Ac3H11_3090 0.78 -2.6
116,849 - Ac3H11_3090 0.78 -0.1
116,849 - Ac3H11_3090 0.78 -0.4
116,854 + Ac3H11_3090 0.79 -0.9
116,854 + Ac3H11_3090 0.79 +0.3
116,896 + Ac3H11_3090 0.81 +0.6
116,896 + Ac3H11_3090 0.81 +0.7
116,896 + Ac3H11_3090 0.81 +1.1
116,896 + Ac3H11_3090 0.81 -0.4
116,896 + Ac3H11_3090 0.81 +0.9
116,896 + Ac3H11_3090 0.81 +1.5
116,896 + Ac3H11_3090 0.81 -0.6
116,896 + Ac3H11_3090 0.81 -1.4
116,896 + Ac3H11_3090 0.81 -0.8
116,896 + Ac3H11_3090 0.81 -0.1
116,896 + Ac3H11_3090 0.81 -0.3
116,896 + Ac3H11_3090 0.81 -0.8
116,896 + Ac3H11_3090 0.81 -0.0
116,896 + Ac3H11_3090 0.81 -0.5
116,896 + Ac3H11_3090 0.81 -0.7
116,896 + Ac3H11_3090 0.81 +1.6
116,896 + Ac3H11_3090 0.81 -2.6
116,896 + Ac3H11_3090 0.81 -1.3
116,896 + Ac3H11_3090 0.81 +1.2
116,897 - Ac3H11_3090 0.81 -0.7
116,897 - Ac3H11_3090 0.81 +1.7
116,897 - Ac3H11_3090 0.81 +0.9
116,897 - Ac3H11_3090 0.81 -1.3
116,897 - Ac3H11_3090 0.81 -0.1
116,897 - Ac3H11_3090 0.81 +1.0
116,897 - Ac3H11_3090 0.81 -2.0
116,897 - Ac3H11_3090 0.81 -1.9
117,079 + +0.2
117,079 + +1.0
117,079 + -1.5
117,079 + -0.4
117,079 + -1.0
117,079 + +1.3
117,080 - -0.3
117,080 - +0.2
117,085 + -0.4
117,085 + -2.1
117,085 + -0.1
117,086 - -0.3
117,253 - +0.6
117,399 + Ac3H11_3091 0.27 -4.4
117,601 + Ac3H11_3091 0.52 -2.2
117,663 + Ac3H11_3091 0.59 +0.8
117,664 - Ac3H11_3091 0.60 +1.0
117,838 - Ac3H11_3091 0.81 -3.8
117,838 - Ac3H11_3091 0.81 +0.0
117,856 + Ac3H11_3091 0.83 +1.0
117,856 + Ac3H11_3091 0.83 -0.7
117,856 + Ac3H11_3091 0.83 +0.6
117,857 - Ac3H11_3091 0.84 -0.2

Or see this region's nucleotide sequence