Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2855

Experiment: Chlorite 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2854 and Ac3H11_2855 are separated by 12 nucleotidesAc3H11_2855 and Ac3H11_2856 overlap by 4 nucleotidesAc3H11_2856 and Ac3H11_2857 are separated by 262 nucleotides Ac3H11_2854 - GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2), at 1,160,796 to 1,162,412 _2854 Ac3H11_2855 - conserved hypothetical protein, at 1,162,425 to 1,162,859 _2855 Ac3H11_2856 - YefM protein (antitoxin to YoeB), at 1,162,856 to 1,163,110 _2856 Ac3H11_2857 - Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205), at 1,163,373 to 1,164,848 _2857 Position (kb) 1162 1163Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1162.535 kb on - strand, within Ac3H11_2855at 1162.535 kb on - strand, within Ac3H11_2855at 1162.535 kb on - strand, within Ac3H11_2855at 1162.535 kb on - strand, within Ac3H11_2855at 1162.778 kb on - strand, within Ac3H11_2855at 1163.092 kb on - strandat 1163.092 kb on - strandat 1163.092 kb on - strandat 1163.096 kb on - strandat 1163.169 kb on - strandat 1163.169 kb on - strandat 1163.210 kb on + strandat 1163.210 kb on + strandat 1163.211 kb on - strandat 1163.211 kb on - strandat 1163.223 kb on - strandat 1163.223 kb on - strandat 1163.386 kb on + strandat 1163.387 kb on - strandat 1163.387 kb on - strandat 1163.387 kb on - strandat 1163.387 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.1 mM
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1,162,535 - Ac3H11_2855 0.25 +1.5
1,162,535 - Ac3H11_2855 0.25 +0.6
1,162,535 - Ac3H11_2855 0.25 +0.1
1,162,535 - Ac3H11_2855 0.25 -0.9
1,162,778 - Ac3H11_2855 0.81 +0.1
1,163,092 - -0.4
1,163,092 - -1.7
1,163,092 - -1.0
1,163,096 - +1.1
1,163,169 - -2.0
1,163,169 - -2.5
1,163,210 + +2.3
1,163,210 + +0.0
1,163,211 - +1.2
1,163,211 - +0.3
1,163,223 - -0.1
1,163,223 - -2.1
1,163,386 + -3.5
1,163,387 - -3.4
1,163,387 - -3.1
1,163,387 - -2.0
1,163,387 - -3.0

Or see this region's nucleotide sequence