Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_214

Experiment: Chlorite 0.1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_212 and Ac3H11_213 are separated by 31 nucleotidesAc3H11_213 and Ac3H11_214 are separated by 229 nucleotidesAc3H11_214 and Ac3H11_215 are separated by 19 nucleotidesAc3H11_215 and Ac3H11_216 are separated by 9 nucleotidesAc3H11_216 and Ac3H11_217 overlap by 4 nucleotides Ac3H11_212 - Gentisate 1,2-dioxygenase (EC 1.13.11.4), at 24,198 to 25,322 _212 Ac3H11_213 - Fumarylacetoacetate hydrolase family protein, at 25,354 to 26,070 _213 Ac3H11_214 - Ferredoxin reductase, at 26,300 to 27,595 _214 Ac3H11_215 - Probable ferredoxin subunit of a ring-hydroxylating dioxygenase oxidoreductase protein (EC 1.-.-.-), at 27,615 to 27,929 _215 Ac3H11_216 - Ortho-halobenzoate 1,2-dioxygenase beta-ISP protein OhbA, at 27,939 to 28,421 _216 Ac3H11_217 - Ortho-halobenzoate 1,2-dioxygenase alpha-ISP protein OhbB, at 28,418 to 29,743 _217 Position (kb) 26 27 28Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 25.356 kb on - strandat 25.438 kb on + strand, within Ac3H11_213at 25.487 kb on + strand, within Ac3H11_213at 25.487 kb on + strand, within Ac3H11_213at 25.488 kb on - strand, within Ac3H11_213at 25.488 kb on - strand, within Ac3H11_213at 25.488 kb on - strand, within Ac3H11_213at 25.733 kb on + strand, within Ac3H11_213at 25.734 kb on - strand, within Ac3H11_213at 25.739 kb on + strand, within Ac3H11_213at 25.739 kb on + strand, within Ac3H11_213at 25.739 kb on + strand, within Ac3H11_213at 25.739 kb on + strand, within Ac3H11_213at 25.740 kb on - strand, within Ac3H11_213at 25.740 kb on - strand, within Ac3H11_213at 25.740 kb on - strand, within Ac3H11_213at 25.740 kb on - strand, within Ac3H11_213at 25.740 kb on - strand, within Ac3H11_213at 25.821 kb on - strand, within Ac3H11_213at 25.892 kb on + strand, within Ac3H11_213at 25.952 kb on + strand, within Ac3H11_213at 25.953 kb on - strand, within Ac3H11_213at 26.022 kb on - strandat 26.045 kb on + strandat 26.045 kb on + strandat 26.088 kb on + strandat 26.103 kb on + strandat 26.228 kb on + strandat 26.228 kb on + strandat 26.229 kb on - strandat 26.229 kb on - strandat 26.442 kb on + strand, within Ac3H11_214at 26.442 kb on + strand, within Ac3H11_214at 26.443 kb on - strand, within Ac3H11_214at 26.515 kb on - strand, within Ac3H11_214at 26.864 kb on - strand, within Ac3H11_214at 26.962 kb on - strand, within Ac3H11_214at 27.232 kb on - strand, within Ac3H11_214at 27.661 kb on + strand, within Ac3H11_215at 27.835 kb on + strand, within Ac3H11_215at 27.836 kb on - strand, within Ac3H11_215at 27.949 kb on + strandat 27.949 kb on + strandat 27.949 kb on + strandat 27.949 kb on + strandat 28.099 kb on + strand, within Ac3H11_216at 28.099 kb on + strand, within Ac3H11_216at 28.099 kb on + strand, within Ac3H11_216at 28.099 kb on + strand, within Ac3H11_216at 28.099 kb on + strand, within Ac3H11_216at 28.100 kb on - strand, within Ac3H11_216at 28.100 kb on - strand, within Ac3H11_216at 28.100 kb on - strand, within Ac3H11_216at 28.100 kb on - strand, within Ac3H11_216at 28.174 kb on + strand, within Ac3H11_216at 28.174 kb on + strand, within Ac3H11_216at 28.175 kb on - strand, within Ac3H11_216at 28.175 kb on - strand, within Ac3H11_216at 28.177 kb on + strand, within Ac3H11_216at 28.177 kb on + strand, within Ac3H11_216at 28.211 kb on - strand, within Ac3H11_216at 28.300 kb on + strand, within Ac3H11_216at 28.301 kb on - strand, within Ac3H11_216at 28.375 kb on + strandat 28.396 kb on + strandat 28.397 kb on - strandat 28.397 kb on - strandat 28.397 kb on - strandat 28.449 kb on + strandat 28.455 kb on + strandat 28.455 kb on + strandat 28.455 kb on + strandat 28.455 kb on + strandat 28.455 kb on + strandat 28.455 kb on + strandat 28.456 kb on - strandat 28.456 kb on - strandat 28.456 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.1 mM
remove
25,356 - -1.7
25,438 + Ac3H11_213 0.12 +1.1
25,487 + Ac3H11_213 0.19 +1.3
25,487 + Ac3H11_213 0.19 -3.5
25,488 - Ac3H11_213 0.19 +0.6
25,488 - Ac3H11_213 0.19 -0.2
25,488 - Ac3H11_213 0.19 +0.8
25,733 + Ac3H11_213 0.53 +0.7
25,734 - Ac3H11_213 0.53 +0.0
25,739 + Ac3H11_213 0.54 +0.3
25,739 + Ac3H11_213 0.54 -1.8
25,739 + Ac3H11_213 0.54 -2.3
25,739 + Ac3H11_213 0.54 +0.4
25,740 - Ac3H11_213 0.54 +0.1
25,740 - Ac3H11_213 0.54 -0.8
25,740 - Ac3H11_213 0.54 +0.5
25,740 - Ac3H11_213 0.54 +0.2
25,740 - Ac3H11_213 0.54 -0.5
25,821 - Ac3H11_213 0.65 +1.2
25,892 + Ac3H11_213 0.75 -1.2
25,952 + Ac3H11_213 0.83 -1.8
25,953 - Ac3H11_213 0.84 -0.4
26,022 - +1.0
26,045 + -0.4
26,045 + -0.7
26,088 + -0.5
26,103 + -0.9
26,228 + +0.1
26,228 + -0.1
26,229 - +1.2
26,229 - +3.1
26,442 + Ac3H11_214 0.11 -1.6
26,442 + Ac3H11_214 0.11 +0.6
26,443 - Ac3H11_214 0.11 -2.1
26,515 - Ac3H11_214 0.17 -0.2
26,864 - Ac3H11_214 0.44 -1.5
26,962 - Ac3H11_214 0.51 +0.1
27,232 - Ac3H11_214 0.72 -1.1
27,661 + Ac3H11_215 0.15 +0.8
27,835 + Ac3H11_215 0.70 +0.0
27,836 - Ac3H11_215 0.70 +2.5
27,949 + -0.2
27,949 + -1.1
27,949 + +1.3
27,949 + +0.1
28,099 + Ac3H11_216 0.33 -0.5
28,099 + Ac3H11_216 0.33 -2.7
28,099 + Ac3H11_216 0.33 +0.1
28,099 + Ac3H11_216 0.33 -2.0
28,099 + Ac3H11_216 0.33 +0.6
28,100 - Ac3H11_216 0.33 -0.9
28,100 - Ac3H11_216 0.33 +1.9
28,100 - Ac3H11_216 0.33 +0.0
28,100 - Ac3H11_216 0.33 +1.3
28,174 + Ac3H11_216 0.49 -0.1
28,174 + Ac3H11_216 0.49 -2.2
28,175 - Ac3H11_216 0.49 -1.7
28,175 - Ac3H11_216 0.49 -1.7
28,177 + Ac3H11_216 0.49 -0.7
28,177 + Ac3H11_216 0.49 +0.3
28,211 - Ac3H11_216 0.56 +0.7
28,300 + Ac3H11_216 0.75 +0.4
28,301 - Ac3H11_216 0.75 +0.5
28,375 + +0.3
28,396 + -1.7
28,397 - +1.0
28,397 - +0.2
28,397 - +2.2
28,449 + +0.5
28,455 + +0.5
28,455 + +0.1
28,455 + +0.0
28,455 + +0.5
28,455 + -3.1
28,455 + +0.2
28,456 - -2.3
28,456 - +0.1
28,456 - +0.9

Or see this region's nucleotide sequence