Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1228

Experiment: Chlorite 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1227 and Ac3H11_1228 are separated by 73 nucleotidesAc3H11_1228 and Ac3H11_1229 are separated by 23 nucleotidesAc3H11_1229 and Ac3H11_1230 are separated by 179 nucleotides Ac3H11_1227 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 44,920 to 45,924 _1227 Ac3H11_1228 - TRAP-type C4-dicarboxylate transport system, large permease component, at 45,998 to 47,278 _1228 Ac3H11_1229 - TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter, at 47,302 to 47,889 _1229 Ac3H11_1230 - Transcriptional regulator, TetR family, at 48,069 to 48,785 _1230 Position (kb) 45 46 47 48Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 45.227 kb on + strand, within Ac3H11_1227at 45.227 kb on + strand, within Ac3H11_1227at 45.227 kb on + strand, within Ac3H11_1227at 45.227 kb on + strand, within Ac3H11_1227at 45.227 kb on + strand, within Ac3H11_1227at 45.228 kb on - strand, within Ac3H11_1227at 45.228 kb on - strand, within Ac3H11_1227at 45.228 kb on - strand, within Ac3H11_1227at 45.228 kb on - strand, within Ac3H11_1227at 45.228 kb on - strand, within Ac3H11_1227at 45.228 kb on - strand, within Ac3H11_1227at 45.251 kb on + strand, within Ac3H11_1227at 45.251 kb on + strand, within Ac3H11_1227at 45.251 kb on + strand, within Ac3H11_1227at 45.252 kb on - strand, within Ac3H11_1227at 45.252 kb on - strand, within Ac3H11_1227at 45.252 kb on - strand, within Ac3H11_1227at 45.338 kb on + strand, within Ac3H11_1227at 45.338 kb on + strand, within Ac3H11_1227at 45.338 kb on + strand, within Ac3H11_1227at 45.339 kb on - strand, within Ac3H11_1227at 45.398 kb on + strand, within Ac3H11_1227at 45.398 kb on + strand, within Ac3H11_1227at 45.399 kb on - strand, within Ac3H11_1227at 45.614 kb on + strand, within Ac3H11_1227at 45.614 kb on + strand, within Ac3H11_1227at 45.614 kb on + strand, within Ac3H11_1227at 45.614 kb on + strand, within Ac3H11_1227at 45.615 kb on - strand, within Ac3H11_1227at 45.947 kb on - strandat 46.539 kb on + strand, within Ac3H11_1228at 46.539 kb on + strand, within Ac3H11_1228at 46.539 kb on + strand, within Ac3H11_1228at 46.540 kb on - strand, within Ac3H11_1228at 46.540 kb on - strand, within Ac3H11_1228at 46.540 kb on - strand, within Ac3H11_1228at 46.540 kb on - strand, within Ac3H11_1228at 46.995 kb on + strand, within Ac3H11_1228at 46.995 kb on + strand, within Ac3H11_1228at 46.995 kb on + strand, within Ac3H11_1228at 46.995 kb on + strand, within Ac3H11_1228at 46.996 kb on - strand, within Ac3H11_1228at 46.996 kb on - strand, within Ac3H11_1228at 46.996 kb on - strand, within Ac3H11_1228at 47.492 kb on + strand, within Ac3H11_1229at 47.492 kb on + strand, within Ac3H11_1229at 47.493 kb on - strandat 47.493 kb on - strand, within Ac3H11_1229at 47.493 kb on - strand, within Ac3H11_1229at 47.541 kb on + strand, within Ac3H11_1229at 47.541 kb on + strand, within Ac3H11_1229at 47.542 kb on - strand, within Ac3H11_1229at 47.542 kb on - strand, within Ac3H11_1229at 47.542 kb on - strand, within Ac3H11_1229at 47.588 kb on + strand, within Ac3H11_1229at 47.588 kb on + strand, within Ac3H11_1229at 47.588 kb on + strand, within Ac3H11_1229at 47.588 kb on + strand, within Ac3H11_1229at 47.588 kb on + strand, within Ac3H11_1229at 47.588 kb on + strand, within Ac3H11_1229at 47.588 kb on + strand, within Ac3H11_1229at 47.588 kb on + strand, within Ac3H11_1229at 47.589 kb on - strand, within Ac3H11_1229at 47.589 kb on - strand, within Ac3H11_1229at 47.589 kb on - strand, within Ac3H11_1229at 47.589 kb on - strand, within Ac3H11_1229at 47.589 kb on - strand, within Ac3H11_1229at 47.589 kb on - strand, within Ac3H11_1229at 47.589 kb on - strand, within Ac3H11_1229at 47.589 kb on - strand, within Ac3H11_1229at 47.589 kb on - strand, within Ac3H11_1229at 47.589 kb on - strand, within Ac3H11_1229at 47.775 kb on - strand, within Ac3H11_1229at 47.855 kb on + strandat 47.908 kb on - strandat 47.908 kb on - strandat 48.274 kb on + strand, within Ac3H11_1230at 48.274 kb on + strand, within Ac3H11_1230at 48.275 kb on - strand, within Ac3H11_1230at 48.275 kb on - strand, within Ac3H11_1230at 48.275 kb on - strand, within Ac3H11_1230

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.1 mM
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45,227 + Ac3H11_1227 0.31 -1.0
45,227 + Ac3H11_1227 0.31 +1.2
45,227 + Ac3H11_1227 0.31 +1.0
45,227 + Ac3H11_1227 0.31 -0.5
45,227 + Ac3H11_1227 0.31 -2.6
45,228 - Ac3H11_1227 0.31 -0.3
45,228 - Ac3H11_1227 0.31 -3.6
45,228 - Ac3H11_1227 0.31 +0.5
45,228 - Ac3H11_1227 0.31 +0.7
45,228 - Ac3H11_1227 0.31 +0.5
45,228 - Ac3H11_1227 0.31 -2.1
45,251 + Ac3H11_1227 0.33 -0.4
45,251 + Ac3H11_1227 0.33 +0.4
45,251 + Ac3H11_1227 0.33 -0.8
45,252 - Ac3H11_1227 0.33 -1.3
45,252 - Ac3H11_1227 0.33 +0.9
45,252 - Ac3H11_1227 0.33 +1.8
45,338 + Ac3H11_1227 0.42 +0.3
45,338 + Ac3H11_1227 0.42 +0.7
45,338 + Ac3H11_1227 0.42 +0.4
45,339 - Ac3H11_1227 0.42 -2.1
45,398 + Ac3H11_1227 0.48 -1.3
45,398 + Ac3H11_1227 0.48 +0.7
45,399 - Ac3H11_1227 0.48 +0.4
45,614 + Ac3H11_1227 0.69 -3.7
45,614 + Ac3H11_1227 0.69 +0.6
45,614 + Ac3H11_1227 0.69 -1.0
45,614 + Ac3H11_1227 0.69 +0.7
45,615 - Ac3H11_1227 0.69 -0.5
45,947 - -3.1
46,539 + Ac3H11_1228 0.42 +0.0
46,539 + Ac3H11_1228 0.42 -0.5
46,539 + Ac3H11_1228 0.42 +0.1
46,540 - Ac3H11_1228 0.42 +0.1
46,540 - Ac3H11_1228 0.42 -0.1
46,540 - Ac3H11_1228 0.42 -2.6
46,540 - Ac3H11_1228 0.42 -1.4
46,995 + Ac3H11_1228 0.78 +1.8
46,995 + Ac3H11_1228 0.78 +0.9
46,995 + Ac3H11_1228 0.78 -2.0
46,995 + Ac3H11_1228 0.78 +0.7
46,996 - Ac3H11_1228 0.78 -2.4
46,996 - Ac3H11_1228 0.78 -1.1
46,996 - Ac3H11_1228 0.78 +1.4
47,492 + Ac3H11_1229 0.32 -0.3
47,492 + Ac3H11_1229 0.32 +0.2
47,493 - +1.6
47,493 - Ac3H11_1229 0.32 -0.1
47,493 - Ac3H11_1229 0.32 -1.0
47,541 + Ac3H11_1229 0.41 -0.7
47,541 + Ac3H11_1229 0.41 +1.9
47,542 - Ac3H11_1229 0.41 -3.1
47,542 - Ac3H11_1229 0.41 +1.2
47,542 - Ac3H11_1229 0.41 -0.9
47,588 + Ac3H11_1229 0.49 +0.6
47,588 + Ac3H11_1229 0.49 +1.0
47,588 + Ac3H11_1229 0.49 -0.1
47,588 + Ac3H11_1229 0.49 +0.6
47,588 + Ac3H11_1229 0.49 -0.1
47,588 + Ac3H11_1229 0.49 +0.3
47,588 + Ac3H11_1229 0.49 -0.1
47,588 + Ac3H11_1229 0.49 -0.9
47,589 - Ac3H11_1229 0.49 -0.0
47,589 - Ac3H11_1229 0.49 -3.9
47,589 - Ac3H11_1229 0.49 +0.3
47,589 - Ac3H11_1229 0.49 -1.7
47,589 - Ac3H11_1229 0.49 -1.2
47,589 - Ac3H11_1229 0.49 -2.0
47,589 - Ac3H11_1229 0.49 +0.6
47,589 - Ac3H11_1229 0.49 +0.3
47,589 - Ac3H11_1229 0.49 -0.5
47,589 - Ac3H11_1229 0.49 -3.6
47,775 - Ac3H11_1229 0.80 -1.2
47,855 + +0.3
47,908 - -0.3
47,908 - -0.0
48,274 + Ac3H11_1230 0.29 -3.9
48,274 + Ac3H11_1230 0.29 +1.1
48,275 - Ac3H11_1230 0.29 -2.3
48,275 - Ac3H11_1230 0.29 +0.3
48,275 - Ac3H11_1230 0.29 -2.5

Or see this region's nucleotide sequence