Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS12135

Experiment: Urea (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS12125 and AZOBR_RS12130 overlap by 4 nucleotidesAZOBR_RS12130 and AZOBR_RS12135 are separated by 80 nucleotidesAZOBR_RS12135 and AZOBR_RS12140 are separated by 196 nucleotidesAZOBR_RS12140 and AZOBR_RS12145 are separated by 75 nucleotides AZOBR_RS12125: AZOBR_RS12125 - hypothetical protein, at 2,549,522 to 2,550,211 _RS12125 AZOBR_RS12130: AZOBR_RS12130 - hypothetical protein, at 2,550,208 to 2,550,642 _RS12130 AZOBR_RS12135: AZOBR_RS12135 - hypothetical protein, at 2,550,723 to 2,550,929 _RS12135 AZOBR_RS12140: AZOBR_RS12140 - hypothetical protein, at 2,551,126 to 2,551,797 _RS12140 AZOBR_RS12145: AZOBR_RS12145 - murein hydrolase transporter LrgA, at 2,551,873 to 2,552,247 _RS12145 Position (kb) 2550 2551Strain fitness (log2 ratio) -1 0 1at 2550.245 kb on + strandat 2550.245 kb on + strandat 2550.299 kb on + strand, within AZOBR_RS12130at 2550.299 kb on + strand, within AZOBR_RS12130at 2550.299 kb on + strand, within AZOBR_RS12130at 2550.591 kb on - strand, within AZOBR_RS12130at 2550.591 kb on - strand, within AZOBR_RS12130at 2551.420 kb on + strand, within AZOBR_RS12140at 2551.802 kb on + strandat 2551.802 kb on + strandat 2551.803 kb on - strandat 2551.833 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea (N)
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2,550,245 + +0.5
2,550,245 + +0.3
2,550,299 + AZOBR_RS12130 0.21 +0.3
2,550,299 + AZOBR_RS12130 0.21 +0.6
2,550,299 + AZOBR_RS12130 0.21 -0.5
2,550,591 - AZOBR_RS12130 0.88 +0.3
2,550,591 - AZOBR_RS12130 0.88 +0.5
2,551,420 + AZOBR_RS12140 0.44 -0.5
2,551,802 + -0.2
2,551,802 + +0.3
2,551,803 - -1.2
2,551,833 + -0.3

Or see this region's nucleotide sequence