Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3050 and Shew_3051 are separated by 98 nucleotides Shew_3051 and Shew_3052 are separated by 214 nucleotides Shew_3052 and Shew_3053 are separated by 21 nucleotides
Shew_3050: Shew_3050 - hypothetical protein (RefSeq), at 3,623,064 to 3,623,420
_3050
Shew_3051: Shew_3051 - cupin 2 domain-containing protein (RefSeq), at 3,623,519 to 3,624,007
_3051
Shew_3052: Shew_3052 - AraC family transcriptional regulator (RefSeq), at 3,624,222 to 3,625,118
_3052
Shew_3053: Shew_3053 - Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq), at 3,625,140 to 3,626,402
_3053
Position (kb)
3624
3625
3626 Strain fitness (log2 ratio)
-1
0
1 at 3623.389 kb on + strand at 3623.654 kb on + strand, within Shew_3051 at 3623.737 kb on + strand, within Shew_3051 at 3623.813 kb on + strand, within Shew_3051 at 3623.869 kb on + strand, within Shew_3051 at 3624.040 kb on + strand at 3624.355 kb on + strand, within Shew_3052 at 3624.793 kb on + strand, within Shew_3052 at 3624.893 kb on + strand, within Shew_3052 at 3625.029 kb on + strand at 3625.306 kb on + strand, within Shew_3053 at 3625.384 kb on - strand, within Shew_3053 at 3625.384 kb on - strand, within Shew_3053 at 3625.843 kb on - strand, within Shew_3053 at 3625.897 kb on + strand, within Shew_3053
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml remove 3,623,389 + -0.7 3,623,654 + Shew_3051 0.28 +0.7 3,623,737 + Shew_3051 0.45 -0.4 3,623,813 + Shew_3051 0.60 +1.0 3,623,869 + Shew_3051 0.72 -0.0 3,624,040 + +0.1 3,624,355 + Shew_3052 0.15 +0.8 3,624,793 + Shew_3052 0.64 +0.3 3,624,893 + Shew_3052 0.75 +0.6 3,625,029 + +0.1 3,625,306 + Shew_3053 0.13 -0.6 3,625,384 - Shew_3053 0.19 -1.3 3,625,384 - Shew_3053 0.19 +0.1 3,625,843 - Shew_3053 0.56 -0.0 3,625,897 + Shew_3053 0.60 -0.2
Or see this region's nucleotide sequence