Strain Fitness in Shewanella loihica PV-4 around Shew_2817

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2816 and Shew_2817 are separated by 341 nucleotidesShew_2817 and Shew_2818 are separated by 177 nucleotides Shew_2816: Shew_2816 - nucleoside-specific channel-forming protein, Tsx (RefSeq), at 3,337,052 to 3,337,885 _2816 Shew_2817: Shew_2817 - nucleoside transporter (RefSeq), at 3,338,227 to 3,339,486 _2817 Shew_2818: Shew_2818 - TatD-related deoxyribonuclease (RefSeq), at 3,339,664 to 3,340,494 _2818 Shew_2819: Shew_2819 - hypothetical protein (RefSeq), at 3,340,475 to 3,340,765 _2819 Position (kb) 3338 3339 3340Strain fitness (log2 ratio) -1 0 1at 3339.338 kb on + strand, within Shew_2817at 3339.470 kb on - strandat 3339.985 kb on + strand, within Shew_2818at 3340.149 kb on + strand, within Shew_2818at 3340.308 kb on + strand, within Shew_2818at 3340.334 kb on + strand, within Shew_2818at 3340.334 kb on + strand, within Shew_2818

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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3,339,338 + Shew_2817 0.88 +1.4
3,339,470 - -0.2
3,339,985 + Shew_2818 0.39 -0.7
3,340,149 + Shew_2818 0.58 +0.3
3,340,308 + Shew_2818 0.77 +0.7
3,340,334 + Shew_2818 0.81 -0.5
3,340,334 + Shew_2818 0.81 +0.0

Or see this region's nucleotide sequence