Strain Fitness in Shewanella loihica PV-4 around Shew_2376

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2375 and Shew_2376 are separated by 483 nucleotidesShew_2376 and Shew_2377 are separated by 161 nucleotides Shew_2375: Shew_2375 - metal dependent phosphohydrolase (RefSeq), at 2,776,848 to 2,778,071 _2375 Shew_2376: Shew_2376 - hypothetical protein (RefSeq), at 2,778,555 to 2,779,025 _2376 Shew_2377: Shew_2377 - DNA ligase, NAD-dependent (RefSeq), at 2,779,187 to 2,781,196 _2377 Position (kb) 2778 2779 2780Strain fitness (log2 ratio) -1 0 1at 2778.027 kb on + strandat 2778.514 kb on - strandat 2779.211 kb on - strandat 2779.211 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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2,778,027 + -0.5
2,778,514 - +0.6
2,779,211 - -0.0
2,779,211 - -1.1

Or see this region's nucleotide sequence