Strain Fitness in Shewanella loihica PV-4 around Shew_2013

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2012 and Shew_2013 are separated by 131 nucleotidesShew_2013 and Shew_2014 are separated by 224 nucleotides Shew_2012: Shew_2012 - inner membrane transport protein YdhC (RefSeq), at 2,327,793 to 2,329,085 _2012 Shew_2013: Shew_2013 - putative DNA-binding transcriptional regulator (RefSeq), at 2,329,217 to 2,330,119 _2013 Shew_2014: Shew_2014 - hypothetical protein (RefSeq), at 2,330,344 to 2,331,003 _2014 Position (kb) 2329 2330 2331Strain fitness (log2 ratio) -3 -2 -1 0 1at 2328.364 kb on - strand, within Shew_2012at 2328.551 kb on - strand, within Shew_2012at 2329.593 kb on - strand, within Shew_2013at 2329.924 kb on - strand, within Shew_2013at 2330.441 kb on + strand, within Shew_2014at 2330.693 kb on + strand, within Shew_2014

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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2,328,364 - Shew_2012 0.44 -0.5
2,328,551 - Shew_2012 0.59 -0.6
2,329,593 - Shew_2013 0.42 -3.4
2,329,924 - Shew_2013 0.78 -1.5
2,330,441 + Shew_2014 0.15 +0.8
2,330,693 + Shew_2014 0.53 -0.3

Or see this region's nucleotide sequence