Strain Fitness in Shewanella loihica PV-4 around Shew_1087

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1085 and Shew_1086 are separated by 126 nucleotidesShew_1086 and Shew_1087 are separated by 64 nucleotidesShew_1087 and pgi are separated by 229 nucleotides Shew_1085: Shew_1085 - response regulator receiver protein (RefSeq), at 1,250,067 to 1,251,161 _1085 Shew_1086: Shew_1086 - hemerythrin HHE cation binding domain-containing protein (RefSeq), at 1,251,288 to 1,251,830 _1086 Shew_1087: Shew_1087 - hypothetical protein (RefSeq), at 1,251,895 to 1,252,086 _1087 Shew_1088: pgi - glucose-6-phosphate isomerase (RefSeq), at 1,252,316 to 1,253,953 pgi Position (kb) 1251 1252 1253Strain fitness (log2 ratio) -1 0 1at 1251.393 kb on - strand, within Shew_1086at 1251.422 kb on + strand, within Shew_1086at 1251.520 kb on - strand, within Shew_1086at 1251.591 kb on + strand, within Shew_1086at 1251.981 kb on + strand, within Shew_1087at 1251.981 kb on + strand, within Shew_1087at 1252.322 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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1,251,393 - Shew_1086 0.19 -0.3
1,251,422 + Shew_1086 0.25 +0.3
1,251,520 - Shew_1086 0.43 +0.2
1,251,591 + Shew_1086 0.56 +0.9
1,251,981 + Shew_1087 0.45 -0.1
1,251,981 + Shew_1087 0.45 -0.9
1,252,322 - -0.5

Or see this region's nucleotide sequence