Strain Fitness in Shewanella loihica PV-4 around Shew_0993

Experiment: Cisplatin 1 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_0992 and Shew_0993 overlap by 4 nucleotidesShew_0993 and Shew_0994 are separated by 231 nucleotides Shew_0992: Shew_0992 - BsuBIPstI restriction endonuclease domain-containing protein (RefSeq), at 1,147,752 to 1,148,849 _0992 Shew_0993: Shew_0993 - Eco57I restriction endonuclease (RefSeq), at 1,148,846 to 1,150,633 _0993 Shew_0994: Shew_0994 - KfrAs (RefSeq), at 1,150,865 to 1,151,482 _0994 Position (kb) 1148 1149 1150 1151Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1147.849 kb on - strandat 1148.535 kb on - strand, within Shew_0992at 1149.077 kb on + strand, within Shew_0993at 1149.419 kb on - strand, within Shew_0993at 1150.522 kb on + strandat 1151.010 kb on + strand, within Shew_0994at 1151.134 kb on + strand, within Shew_0994at 1151.134 kb on + strand, within Shew_0994at 1151.386 kb on + strand, within Shew_0994at 1151.630 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
remove
1,147,849 - +0.2
1,148,535 - Shew_0992 0.71 +0.1
1,149,077 + Shew_0993 0.13 -1.5
1,149,419 - Shew_0993 0.32 -4.2
1,150,522 + +0.8
1,151,010 + Shew_0994 0.23 +0.5
1,151,134 + Shew_0994 0.44 +0.6
1,151,134 + Shew_0994 0.44 +0.7
1,151,386 + Shew_0994 0.84 +0.1
1,151,630 - -0.3

Or see this region's nucleotide sequence