Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0779 and Shew_0780 overlap by 4 nucleotides Shew_0780 and Shew_0781 are separated by 119 nucleotides
Shew_0779: Shew_0779 - aspartate kinase III (RefSeq), at 890,141 to 891,499
_0779
Shew_0780: Shew_0780 - succinylglutamate desuccinylase/aspartoacylase (RefSeq), at 891,496 to 892,602
_0780
Shew_0781: Shew_0781 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 892,722 to 896,573
_0781
Position (kb) 891
892
893 Strain fitness (log2 ratio) -2
-1
0
1
2 at 891.072 kb on - strand, within Shew_0779 at 891.171 kb on + strand, within Shew_0779 at 891.199 kb on + strand, within Shew_0779 at 891.283 kb on + strand, within Shew_0779 at 891.517 kb on - strand at 891.642 kb on - strand, within Shew_0780 at 891.965 kb on + strand, within Shew_0780 at 892.016 kb on + strand, within Shew_0780 at 892.038 kb on + strand, within Shew_0780 at 892.046 kb on - strand, within Shew_0780 at 892.084 kb on - strand, within Shew_0780 at 892.089 kb on - strand, within Shew_0780 at 892.167 kb on - strand, within Shew_0780 at 892.233 kb on + strand, within Shew_0780 at 892.233 kb on + strand, within Shew_0780 at 892.381 kb on + strand, within Shew_0780 at 892.876 kb on - strand at 892.886 kb on - strand at 893.009 kb on + strand at 893.060 kb on + strand at 893.140 kb on - strand, within Shew_0781 at 893.256 kb on - strand, within Shew_0781 at 893.461 kb on - strand, within Shew_0781 at 893.471 kb on - strand, within Shew_0781
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml remove 891,072 - Shew_0779 0.69 +0.6 891,171 + Shew_0779 0.76 +0.6 891,199 + Shew_0779 0.78 +0.1 891,283 + Shew_0779 0.84 +0.1 891,517 - -0.4 891,642 - Shew_0780 0.13 -0.4 891,965 + Shew_0780 0.42 +0.0 892,016 + Shew_0780 0.47 +0.3 892,038 + Shew_0780 0.49 -0.3 892,046 - Shew_0780 0.50 +2.0 892,084 - Shew_0780 0.53 -0.1 892,089 - Shew_0780 0.54 -0.2 892,167 - Shew_0780 0.61 -2.0 892,233 + Shew_0780 0.67 +0.0 892,233 + Shew_0780 0.67 +0.4 892,381 + Shew_0780 0.80 -0.0 892,876 - +0.1 892,886 - +0.1 893,009 + +0.1 893,060 + +2.5 893,140 - Shew_0781 0.11 -0.3 893,256 - Shew_0781 0.14 +0.2 893,461 - Shew_0781 0.19 -0.1 893,471 - Shew_0781 0.19 +0.1
Or see this region's nucleotide sequence