Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0450 and Shew_0451 are separated by 24 nucleotides Shew_0451 and Shew_0452 are separated by 77 nucleotides Shew_0452 and Shew_0453 are separated by 13 nucleotides
Shew_0450: Shew_0450 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (RefSeq), at 501,186 to 501,920
_0450
Shew_0451: Shew_0451 - hypothetical protein (RefSeq), at 501,945 to 502,352
_0451
Shew_0452: Shew_0452 - diguanylate cyclase (RefSeq), at 502,430 to 503,401
_0452
Shew_0453: Shew_0453 - response regulator receiver protein (RefSeq), at 503,415 to 504,410
_0453
Position (kb) 502
503
504 Strain fitness (log2 ratio) -1
0
1 at 501.451 kb on + strand, within Shew_0450 at 501.459 kb on - strand, within Shew_0450 at 501.462 kb on + strand, within Shew_0450 at 502.042 kb on + strand, within Shew_0451 at 502.225 kb on + strand, within Shew_0451 at 502.430 kb on + strand at 502.568 kb on + strand, within Shew_0452 at 502.916 kb on + strand, within Shew_0452 at 502.934 kb on + strand, within Shew_0452 at 503.335 kb on + strand at 503.342 kb on + strand at 503.343 kb on - strand at 503.402 kb on + strand at 503.421 kb on - strand at 503.430 kb on + strand at 503.719 kb on + strand, within Shew_0453 at 503.761 kb on - strand, within Shew_0453 at 504.038 kb on + strand, within Shew_0453 at 504.055 kb on + strand, within Shew_0453
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml remove 501,451 + Shew_0450 0.36 +0.1 501,459 - Shew_0450 0.37 +0.6 501,462 + Shew_0450 0.38 -0.3 502,042 + Shew_0451 0.24 +0.1 502,225 + Shew_0451 0.69 -0.7 502,430 + +0.4 502,568 + Shew_0452 0.14 -0.8 502,916 + Shew_0452 0.50 +0.0 502,934 + Shew_0452 0.52 -0.6 503,335 + -0.2 503,342 + -0.3 503,343 - +0.4 503,402 + +0.0 503,421 - +0.1 503,430 + -1.2 503,719 + Shew_0453 0.31 -0.0 503,761 - Shew_0453 0.35 +0.4 504,038 + Shew_0453 0.63 +0.1 504,055 + Shew_0453 0.64 +0.2
Or see this region's nucleotide sequence