Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_676

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_675 and Pf6N2E2_676 are separated by 10 nucleotidesPf6N2E2_676 and Pf6N2E2_677 are separated by 233 nucleotides Pf6N2E2_675 - 2-Methylcitrate dehydratase AcnD, at 779,331 to 781,106 _675 Pf6N2E2_676 - ABC transporter, substrate binding protein, at 781,117 to 781,935 _676 Pf6N2E2_677 - Transcriptional regulator, AraC family, at 782,169 to 782,918 _677 Position (kb) 781 782Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 780.197 kb on - strand, within Pf6N2E2_675at 780.263 kb on - strand, within Pf6N2E2_675at 780.304 kb on + strand, within Pf6N2E2_675at 780.304 kb on + strand, within Pf6N2E2_675at 780.304 kb on + strand, within Pf6N2E2_675at 780.304 kb on + strand, within Pf6N2E2_675at 780.304 kb on + strand, within Pf6N2E2_675at 780.304 kb on + strand, within Pf6N2E2_675at 780.305 kb on - strand, within Pf6N2E2_675at 780.469 kb on + strand, within Pf6N2E2_675at 780.469 kb on + strand, within Pf6N2E2_675at 780.469 kb on + strand, within Pf6N2E2_675at 780.470 kb on - strand, within Pf6N2E2_675at 780.470 kb on - strand, within Pf6N2E2_675at 781.121 kb on + strandat 781.121 kb on + strandat 781.124 kb on + strandat 781.124 kb on + strandat 781.235 kb on + strand, within Pf6N2E2_676at 781.235 kb on + strand, within Pf6N2E2_676at 781.235 kb on + strand, within Pf6N2E2_676at 781.236 kb on - strand, within Pf6N2E2_676at 781.280 kb on + strand, within Pf6N2E2_676at 781.280 kb on + strand, within Pf6N2E2_676at 781.280 kb on + strand, within Pf6N2E2_676at 781.280 kb on + strand, within Pf6N2E2_676at 781.280 kb on + strand, within Pf6N2E2_676at 781.280 kb on + strand, within Pf6N2E2_676at 781.280 kb on + strand, within Pf6N2E2_676at 781.280 kb on + strand, within Pf6N2E2_676at 781.281 kb on - strand, within Pf6N2E2_676at 781.281 kb on - strand, within Pf6N2E2_676at 781.281 kb on - strand, within Pf6N2E2_676at 781.281 kb on - strand, within Pf6N2E2_676at 781.281 kb on - strand, within Pf6N2E2_676at 781.292 kb on + strand, within Pf6N2E2_676at 781.293 kb on - strand, within Pf6N2E2_676at 781.325 kb on + strand, within Pf6N2E2_676at 781.325 kb on + strand, within Pf6N2E2_676at 781.326 kb on - strand, within Pf6N2E2_676at 781.326 kb on - strand, within Pf6N2E2_676at 781.487 kb on + strand, within Pf6N2E2_676at 781.500 kb on + strand, within Pf6N2E2_676at 781.532 kb on + strand, within Pf6N2E2_676at 781.533 kb on - strand, within Pf6N2E2_676at 781.533 kb on - strand, within Pf6N2E2_676at 781.533 kb on - strand, within Pf6N2E2_676at 781.717 kb on + strand, within Pf6N2E2_676at 781.718 kb on - strand, within Pf6N2E2_676at 781.748 kb on + strand, within Pf6N2E2_676at 781.748 kb on + strand, within Pf6N2E2_676at 781.749 kb on - strand, within Pf6N2E2_676at 781.749 kb on - strand, within Pf6N2E2_676at 781.773 kb on + strand, within Pf6N2E2_676at 781.935 kb on + strandat 781.936 kb on - strandat 781.954 kb on + strandat 781.955 kb on - strandat 782.060 kb on + strandat 782.060 kb on + strandat 782.121 kb on - strandat 782.252 kb on - strand, within Pf6N2E2_677at 782.456 kb on + strand, within Pf6N2E2_677at 782.457 kb on - strand, within Pf6N2E2_677at 782.592 kb on + strand, within Pf6N2E2_677at 782.592 kb on + strand, within Pf6N2E2_677at 782.592 kb on + strand, within Pf6N2E2_677at 782.593 kb on - strand, within Pf6N2E2_677at 782.593 kb on - strand, within Pf6N2E2_677at 782.611 kb on + strand, within Pf6N2E2_677at 782.611 kb on + strand, within Pf6N2E2_677at 782.914 kb on + strandat 782.914 kb on + strandat 782.914 kb on + strandat 782.914 kb on + strandat 782.914 kb on + strandat 782.914 kb on + strandat 782.915 kb on - strandat 782.915 kb on - strandat 782.915 kb on - strandat 782.915 kb on - strandat 782.915 kb on - strandat 782.915 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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780,197 - Pf6N2E2_675 0.49 +0.9
780,263 - Pf6N2E2_675 0.52 -3.7
780,304 + Pf6N2E2_675 0.55 +0.4
780,304 + Pf6N2E2_675 0.55 -0.2
780,304 + Pf6N2E2_675 0.55 +1.6
780,304 + Pf6N2E2_675 0.55 +0.4
780,304 + Pf6N2E2_675 0.55 -1.2
780,304 + Pf6N2E2_675 0.55 +0.4
780,305 - Pf6N2E2_675 0.55 +0.2
780,469 + Pf6N2E2_675 0.64 -2.0
780,469 + Pf6N2E2_675 0.64 -1.9
780,469 + Pf6N2E2_675 0.64 +2.1
780,470 - Pf6N2E2_675 0.64 -0.0
780,470 - Pf6N2E2_675 0.64 +0.3
781,121 + +1.0
781,121 + -0.2
781,124 + -2.0
781,124 + +0.7
781,235 + Pf6N2E2_676 0.14 +1.9
781,235 + Pf6N2E2_676 0.14 +1.1
781,235 + Pf6N2E2_676 0.14 +0.3
781,236 - Pf6N2E2_676 0.15 +0.6
781,280 + Pf6N2E2_676 0.20 -0.8
781,280 + Pf6N2E2_676 0.20 -0.3
781,280 + Pf6N2E2_676 0.20 -0.1
781,280 + Pf6N2E2_676 0.20 +0.3
781,280 + Pf6N2E2_676 0.20 +1.2
781,280 + Pf6N2E2_676 0.20 +0.3
781,280 + Pf6N2E2_676 0.20 -2.8
781,280 + Pf6N2E2_676 0.20 -2.6
781,281 - Pf6N2E2_676 0.20 -0.1
781,281 - Pf6N2E2_676 0.20 -2.1
781,281 - Pf6N2E2_676 0.20 -1.0
781,281 - Pf6N2E2_676 0.20 -1.3
781,281 - Pf6N2E2_676 0.20 +0.0
781,292 + Pf6N2E2_676 0.21 +0.5
781,293 - Pf6N2E2_676 0.21 -0.0
781,325 + Pf6N2E2_676 0.25 -0.5
781,325 + Pf6N2E2_676 0.25 +0.1
781,326 - Pf6N2E2_676 0.26 -1.3
781,326 - Pf6N2E2_676 0.26 +1.1
781,487 + Pf6N2E2_676 0.45 +0.1
781,500 + Pf6N2E2_676 0.47 -0.2
781,532 + Pf6N2E2_676 0.51 -0.6
781,533 - Pf6N2E2_676 0.51 +0.1
781,533 - Pf6N2E2_676 0.51 -0.3
781,533 - Pf6N2E2_676 0.51 +0.0
781,717 + Pf6N2E2_676 0.73 +0.4
781,718 - Pf6N2E2_676 0.73 -1.7
781,748 + Pf6N2E2_676 0.77 -3.9
781,748 + Pf6N2E2_676 0.77 -0.2
781,749 - Pf6N2E2_676 0.77 +0.7
781,749 - Pf6N2E2_676 0.77 -1.3
781,773 + Pf6N2E2_676 0.80 -1.7
781,935 + -2.2
781,936 - +0.1
781,954 + -0.3
781,955 - +0.6
782,060 + -0.8
782,060 + +0.7
782,121 - +2.1
782,252 - Pf6N2E2_677 0.11 -2.0
782,456 + Pf6N2E2_677 0.38 +1.5
782,457 - Pf6N2E2_677 0.38 -1.3
782,592 + Pf6N2E2_677 0.56 +1.7
782,592 + Pf6N2E2_677 0.56 -0.2
782,592 + Pf6N2E2_677 0.56 +0.6
782,593 - Pf6N2E2_677 0.57 -0.1
782,593 - Pf6N2E2_677 0.57 -0.3
782,611 + Pf6N2E2_677 0.59 -1.3
782,611 + Pf6N2E2_677 0.59 -0.2
782,914 + -0.3
782,914 + -0.1
782,914 + -1.0
782,914 + -1.3
782,914 + -0.5
782,914 + +0.8
782,915 - +0.3
782,915 - -1.4
782,915 - +0.1
782,915 - +1.0
782,915 - -0.8
782,915 - -0.0

Or see this region's nucleotide sequence