Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_619 and Pf6N2E2_620 are separated by 337 nucleotides Pf6N2E2_620 and Pf6N2E2_621 overlap by 4 nucleotides
Pf6N2E2_619 - Exonuclease SbcD, at 704,047 to 705,291
_619
Pf6N2E2_620 - BatD, at 705,629 to 707,266
_620
Pf6N2E2_621 - TPR domain protein in aerotolerance operon, at 707,263 to 708,999
_621
Position (kb) 705
706
707
708 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 704.770 kb on - strand, within Pf6N2E2_619 at 705.102 kb on - strand, within Pf6N2E2_619 at 705.147 kb on + strand, within Pf6N2E2_619 at 705.296 kb on + strand at 705.296 kb on + strand at 705.579 kb on + strand at 705.630 kb on + strand at 705.631 kb on - strand at 705.754 kb on - strand at 705.892 kb on + strand, within Pf6N2E2_620 at 705.893 kb on - strand, within Pf6N2E2_620 at 705.893 kb on - strand, within Pf6N2E2_620 at 706.036 kb on - strand, within Pf6N2E2_620 at 706.488 kb on + strand, within Pf6N2E2_620 at 706.653 kb on + strand, within Pf6N2E2_620 at 706.653 kb on + strand, within Pf6N2E2_620 at 706.654 kb on - strand, within Pf6N2E2_620 at 706.654 kb on - strand, within Pf6N2E2_620 at 706.710 kb on + strand, within Pf6N2E2_620 at 706.782 kb on + strand, within Pf6N2E2_620 at 706.836 kb on + strand, within Pf6N2E2_620 at 706.836 kb on + strand, within Pf6N2E2_620 at 706.836 kb on + strand, within Pf6N2E2_620 at 706.836 kb on + strand, within Pf6N2E2_620 at 706.836 kb on + strand, within Pf6N2E2_620 at 706.836 kb on + strand, within Pf6N2E2_620 at 706.836 kb on + strand, within Pf6N2E2_620 at 706.836 kb on + strand, within Pf6N2E2_620 at 706.836 kb on + strand, within Pf6N2E2_620 at 706.836 kb on + strand, within Pf6N2E2_620 at 706.837 kb on - strand, within Pf6N2E2_620 at 706.837 kb on - strand, within Pf6N2E2_620 at 706.837 kb on - strand, within Pf6N2E2_620 at 706.837 kb on - strand, within Pf6N2E2_620 at 707.247 kb on + strand at 707.247 kb on + strand at 707.248 kb on - strand at 707.248 kb on - strand at 707.313 kb on + strand at 707.458 kb on + strand, within Pf6N2E2_621 at 707.458 kb on + strand, within Pf6N2E2_621 at 707.458 kb on + strand, within Pf6N2E2_621 at 707.459 kb on - strand, within Pf6N2E2_621 at 707.723 kb on + strand, within Pf6N2E2_621 at 707.723 kb on + strand, within Pf6N2E2_621 at 707.723 kb on + strand, within Pf6N2E2_621 at 707.723 kb on + strand, within Pf6N2E2_621 at 707.780 kb on + strand, within Pf6N2E2_621 at 707.780 kb on + strand, within Pf6N2E2_621 at 707.781 kb on - strand, within Pf6N2E2_621 at 707.995 kb on + strand, within Pf6N2E2_621 at 707.995 kb on + strand, within Pf6N2E2_621 at 707.996 kb on - strand, within Pf6N2E2_621
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 704,770 - Pf6N2E2_619 0.58 +0.1 705,102 - Pf6N2E2_619 0.85 -1.3 705,147 + Pf6N2E2_619 0.88 +1.1 705,296 + +1.1 705,296 + +0.5 705,579 + -0.5 705,630 + -0.3 705,631 - +0.1 705,754 - -1.6 705,892 + Pf6N2E2_620 0.16 -1.6 705,893 - Pf6N2E2_620 0.16 +1.6 705,893 - Pf6N2E2_620 0.16 -2.2 706,036 - Pf6N2E2_620 0.25 -3.4 706,488 + Pf6N2E2_620 0.52 -1.2 706,653 + Pf6N2E2_620 0.63 -1.2 706,653 + Pf6N2E2_620 0.63 -1.1 706,654 - Pf6N2E2_620 0.63 -3.0 706,654 - Pf6N2E2_620 0.63 -3.5 706,710 + Pf6N2E2_620 0.66 -2.1 706,782 + Pf6N2E2_620 0.70 -0.3 706,836 + Pf6N2E2_620 0.74 -2.3 706,836 + Pf6N2E2_620 0.74 -1.8 706,836 + Pf6N2E2_620 0.74 -1.3 706,836 + Pf6N2E2_620 0.74 -2.6 706,836 + Pf6N2E2_620 0.74 -1.2 706,836 + Pf6N2E2_620 0.74 +1.0 706,836 + Pf6N2E2_620 0.74 -1.4 706,836 + Pf6N2E2_620 0.74 -0.3 706,836 + Pf6N2E2_620 0.74 -2.2 706,836 + Pf6N2E2_620 0.74 -2.1 706,837 - Pf6N2E2_620 0.74 -1.6 706,837 - Pf6N2E2_620 0.74 +1.2 706,837 - Pf6N2E2_620 0.74 -1.4 706,837 - Pf6N2E2_620 0.74 -1.7 707,247 + -0.2 707,247 + -3.2 707,248 - -1.1 707,248 - -0.3 707,313 + -3.5 707,458 + Pf6N2E2_621 0.11 +0.6 707,458 + Pf6N2E2_621 0.11 -1.6 707,458 + Pf6N2E2_621 0.11 -3.2 707,459 - Pf6N2E2_621 0.11 -2.8 707,723 + Pf6N2E2_621 0.26 -2.7 707,723 + Pf6N2E2_621 0.26 -2.9 707,723 + Pf6N2E2_621 0.26 -2.4 707,723 + Pf6N2E2_621 0.26 -1.3 707,780 + Pf6N2E2_621 0.30 -1.4 707,780 + Pf6N2E2_621 0.30 -1.3 707,781 - Pf6N2E2_621 0.30 -1.7 707,995 + Pf6N2E2_621 0.42 -2.0 707,995 + Pf6N2E2_621 0.42 -1.0 707,996 - Pf6N2E2_621 0.42 -0.3
Or see this region's nucleotide sequence