Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5950

Experiment: octanoate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_5947 and Pf6N2E2_5948 are separated by 105 nucleotidesPf6N2E2_5948 and Pf6N2E2_5949 are separated by 83 nucleotidesPf6N2E2_5949 and Pf6N2E2_5950 are separated by 18 nucleotidesPf6N2E2_5950 and Pf6N2E2_5951 are separated by 177 nucleotides Pf6N2E2_5947 - FIG146278: Maf/YceF/YhdE family protein, at 6,768,395 to 6,768,973 _5947 Pf6N2E2_5948 - COG1399 protein, clustered with ribosomal protein L32p, at 6,769,079 to 6,769,606 _5948 Pf6N2E2_5949 - hypothetical protein, at 6,769,690 to 6,769,929 _5949 Pf6N2E2_5950 - Phosphate:acyl-ACP acyltransferase PlsX, at 6,769,948 to 6,770,817 _5950 Pf6N2E2_5951 - Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39), at 6,770,995 to 6,771,879 _5951 Position (kb) 6769 6770 6771Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 6768.959 kb on + strandat 6768.959 kb on + strandat 6768.959 kb on + strandat 6768.959 kb on + strandat 6768.959 kb on + strandat 6768.960 kb on - strandat 6768.962 kb on + strandat 6769.003 kb on + strandat 6770.431 kb on + strand, within Pf6N2E2_5950at 6770.431 kb on + strand, within Pf6N2E2_5950at 6770.431 kb on + strand, within Pf6N2E2_5950at 6770.431 kb on + strand, within Pf6N2E2_5950at 6770.431 kb on + strand, within Pf6N2E2_5950at 6770.431 kb on + strand, within Pf6N2E2_5950at 6770.431 kb on + strand, within Pf6N2E2_5950at 6770.431 kb on + strand, within Pf6N2E2_5950at 6770.811 kb on - strandat 6770.815 kb on + strandat 6770.815 kb on + strandat 6770.816 kb on - strandat 6770.839 kb on + strandat 6770.839 kb on + strandat 6770.839 kb on + strandat 6770.839 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
remove
6,768,959 + -0.4
6,768,959 + +0.6
6,768,959 + -1.1
6,768,959 + +0.3
6,768,959 + +0.3
6,768,960 - +1.0
6,768,962 + +1.0
6,769,003 + +0.4
6,770,431 + Pf6N2E2_5950 0.56 -1.0
6,770,431 + Pf6N2E2_5950 0.56 -1.4
6,770,431 + Pf6N2E2_5950 0.56 -0.9
6,770,431 + Pf6N2E2_5950 0.56 -1.0
6,770,431 + Pf6N2E2_5950 0.56 -1.5
6,770,431 + Pf6N2E2_5950 0.56 -0.8
6,770,431 + Pf6N2E2_5950 0.56 -4.2
6,770,431 + Pf6N2E2_5950 0.56 -1.8
6,770,811 - -0.8
6,770,815 + -0.3
6,770,815 + -0.9
6,770,816 - -1.5
6,770,839 + +0.9
6,770,839 + -0.0
6,770,839 + -0.0
6,770,839 + +0.1

Or see this region's nucleotide sequence