Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_528 and Pf6N2E2_529 are separated by 792 nucleotides Pf6N2E2_529 and Pf6N2E2_530 are separated by 171 nucleotides
Pf6N2E2_528 - FIG00961088: hypothetical protein, at 597,724 to 597,954
_528
Pf6N2E2_529 - FIG00954439: hypothetical protein, at 598,747 to 599,196
_529
Pf6N2E2_530 - Histidine transporter, periplasmic histidine-binding protein, at 599,368 to 600,378
_530
Position (kb) 598
599
600 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 598.058 kb on + strand at 598.058 kb on + strand at 598.058 kb on + strand at 598.058 kb on + strand at 598.059 kb on - strand at 598.059 kb on - strand at 598.059 kb on - strand at 598.059 kb on - strand at 598.059 kb on - strand at 598.059 kb on - strand at 598.077 kb on + strand at 598.077 kb on + strand at 598.077 kb on + strand at 598.128 kb on + strand at 598.150 kb on + strand at 598.151 kb on - strand at 598.335 kb on + strand at 598.342 kb on + strand at 598.369 kb on + strand at 598.393 kb on + strand at 598.425 kb on + strand at 598.426 kb on - strand at 598.429 kb on + strand at 598.429 kb on + strand at 598.429 kb on + strand at 598.430 kb on - strand at 598.430 kb on - strand at 598.430 kb on - strand at 598.495 kb on + strand at 598.582 kb on + strand at 598.582 kb on + strand at 598.582 kb on + strand at 598.582 kb on + strand at 598.582 kb on + strand at 598.582 kb on + strand at 598.582 kb on + strand at 598.582 kb on + strand at 598.582 kb on + strand at 598.582 kb on + strand at 598.582 kb on + strand at 598.582 kb on + strand at 598.582 kb on + strand at 598.583 kb on - strand at 598.583 kb on - strand at 598.583 kb on - strand at 598.583 kb on - strand at 598.583 kb on - strand at 598.583 kb on - strand at 598.584 kb on + strand at 598.584 kb on + strand at 598.584 kb on + strand at 598.584 kb on + strand at 598.585 kb on - strand at 598.646 kb on + strand at 598.655 kb on - strand at 598.734 kb on - strand at 598.734 kb on - strand at 598.734 kb on - strand at 598.737 kb on + strand at 598.737 kb on + strand at 598.737 kb on + strand at 598.757 kb on + strand at 598.764 kb on - strand at 598.764 kb on - strand at 598.816 kb on + strand, within Pf6N2E2_529 at 598.816 kb on + strand, within Pf6N2E2_529 at 598.817 kb on - strand, within Pf6N2E2_529 at 598.842 kb on + strand, within Pf6N2E2_529 at 598.843 kb on - strand, within Pf6N2E2_529 at 598.843 kb on - strand, within Pf6N2E2_529 at 598.846 kb on + strand, within Pf6N2E2_529 at 598.846 kb on + strand, within Pf6N2E2_529 at 598.846 kb on + strand, within Pf6N2E2_529 at 598.846 kb on + strand, within Pf6N2E2_529 at 598.847 kb on - strand, within Pf6N2E2_529 at 598.847 kb on - strand, within Pf6N2E2_529 at 598.847 kb on - strand, within Pf6N2E2_529 at 598.847 kb on - strand, within Pf6N2E2_529 at 598.847 kb on - strand, within Pf6N2E2_529 at 598.999 kb on + strand, within Pf6N2E2_529 at 599.014 kb on + strand, within Pf6N2E2_529 at 599.298 kb on + strand at 599.298 kb on + strand at 599.354 kb on - strand at 599.569 kb on - strand, within Pf6N2E2_530 at 599.725 kb on + strand, within Pf6N2E2_530 at 599.726 kb on - strand, within Pf6N2E2_530 at 599.803 kb on + strand, within Pf6N2E2_530 at 599.926 kb on + strand, within Pf6N2E2_530 at 599.926 kb on + strand, within Pf6N2E2_530 at 599.926 kb on + strand, within Pf6N2E2_530 at 599.926 kb on + strand, within Pf6N2E2_530 at 599.926 kb on + strand, within Pf6N2E2_530 at 599.927 kb on - strand, within Pf6N2E2_530 at 599.927 kb on - strand, within Pf6N2E2_530 at 599.927 kb on - strand, within Pf6N2E2_530 at 600.010 kb on + strand, within Pf6N2E2_530 at 600.010 kb on + strand, within Pf6N2E2_530 at 600.010 kb on + strand, within Pf6N2E2_530 at 600.011 kb on - strand, within Pf6N2E2_530 at 600.013 kb on + strand, within Pf6N2E2_530 at 600.013 kb on + strand, within Pf6N2E2_530 at 600.014 kb on - strand, within Pf6N2E2_530
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 598,058 + +1.9 598,058 + -0.9 598,058 + -0.9 598,058 + -0.4 598,059 - +1.2 598,059 - -1.5 598,059 - +0.1 598,059 - -1.1 598,059 - +0.3 598,059 - +0.8 598,077 + +0.6 598,077 + +0.0 598,077 + +1.1 598,128 + +1.4 598,150 + +1.3 598,151 - -1.0 598,335 + +0.6 598,342 + +0.3 598,369 + -0.7 598,393 + -0.3 598,425 + -0.3 598,426 - -2.5 598,429 + +2.2 598,429 + +0.8 598,429 + -2.3 598,430 - -1.4 598,430 - -2.2 598,430 - -1.0 598,495 + +1.3 598,582 + -0.5 598,582 + +0.7 598,582 + +0.1 598,582 + -0.1 598,582 + +2.2 598,582 + +0.5 598,582 + +1.0 598,582 + +1.2 598,582 + +0.1 598,582 + +1.1 598,582 + +0.5 598,582 + -1.1 598,582 + -1.1 598,583 - +0.9 598,583 - -3.3 598,583 - -3.4 598,583 - -1.8 598,583 - -0.1 598,583 - -1.0 598,584 + +1.2 598,584 + +0.2 598,584 + +1.3 598,584 + +1.3 598,585 - -2.6 598,646 + +0.4 598,655 - -2.4 598,734 - -2.9 598,734 - -2.7 598,734 - +0.0 598,737 + +0.4 598,737 + -1.2 598,737 + -3.2 598,757 + +1.1 598,764 - +0.9 598,764 - +0.2 598,816 + Pf6N2E2_529 0.15 -2.1 598,816 + Pf6N2E2_529 0.15 -1.5 598,817 - Pf6N2E2_529 0.16 -0.9 598,842 + Pf6N2E2_529 0.21 +0.1 598,843 - Pf6N2E2_529 0.21 -1.0 598,843 - Pf6N2E2_529 0.21 -2.9 598,846 + Pf6N2E2_529 0.22 -1.2 598,846 + Pf6N2E2_529 0.22 -0.2 598,846 + Pf6N2E2_529 0.22 -1.9 598,846 + Pf6N2E2_529 0.22 -1.0 598,847 - Pf6N2E2_529 0.22 -0.9 598,847 - Pf6N2E2_529 0.22 +1.0 598,847 - Pf6N2E2_529 0.22 -2.4 598,847 - Pf6N2E2_529 0.22 -1.7 598,847 - Pf6N2E2_529 0.22 -2.0 598,999 + Pf6N2E2_529 0.56 -2.3 599,014 + Pf6N2E2_529 0.59 -1.6 599,298 + -0.3 599,298 + -1.0 599,354 - -1.6 599,569 - Pf6N2E2_530 0.20 -0.5 599,725 + Pf6N2E2_530 0.35 -2.0 599,726 - Pf6N2E2_530 0.35 -2.2 599,803 + Pf6N2E2_530 0.43 +0.4 599,926 + Pf6N2E2_530 0.55 +1.3 599,926 + Pf6N2E2_530 0.55 -1.0 599,926 + Pf6N2E2_530 0.55 +0.2 599,926 + Pf6N2E2_530 0.55 +0.4 599,926 + Pf6N2E2_530 0.55 +0.4 599,927 - Pf6N2E2_530 0.55 -0.1 599,927 - Pf6N2E2_530 0.55 +0.1 599,927 - Pf6N2E2_530 0.55 -0.4 600,010 + Pf6N2E2_530 0.64 -2.0 600,010 + Pf6N2E2_530 0.64 -0.2 600,010 + Pf6N2E2_530 0.64 -3.9 600,011 - Pf6N2E2_530 0.64 -0.3 600,013 + Pf6N2E2_530 0.64 -0.3 600,013 + Pf6N2E2_530 0.64 -0.1 600,014 - Pf6N2E2_530 0.64 +0.9
Or see this region's nucleotide sequence