Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5091 and Pf6N2E2_5092 are separated by 89 nucleotides Pf6N2E2_5092 and Pf6N2E2_5093 are separated by 274 nucleotides
Pf6N2E2_5091 - putative outermembrane protein, at 5,873,119 to 5,874,972
_5091
Pf6N2E2_5092 - FIG00953225: hypothetical protein, at 5,875,062 to 5,875,550
_5092
Pf6N2E2_5093 - ATP-dependent protease La (EC 3.4.21.53) Type II, at 5,875,825 to 5,878,263
_5093
Position (kb) 5873
5874
5875 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5872.195 kb on + strand at 5872.371 kb on + strand at 5872.371 kb on + strand at 5872.404 kb on - strand at 5872.570 kb on + strand at 5872.570 kb on + strand at 5872.673 kb on + strand at 5872.780 kb on + strand at 5872.787 kb on + strand at 5872.813 kb on + strand at 5872.830 kb on + strand at 5872.976 kb on + strand at 5873.007 kb on - strand at 5873.007 kb on - strand at 5873.118 kb on - strand at 5873.118 kb on - strand at 5873.124 kb on - strand at 5873.129 kb on + strand at 5873.130 kb on - strand at 5873.130 kb on - strand at 5873.130 kb on - strand at 5873.130 kb on - strand at 5873.277 kb on - strand at 5873.277 kb on - strand at 5873.277 kb on - strand at 5873.277 kb on - strand at 5873.277 kb on - strand at 5873.615 kb on + strand, within Pf6N2E2_5091 at 5873.616 kb on - strand, within Pf6N2E2_5091 at 5873.616 kb on - strand, within Pf6N2E2_5091 at 5873.693 kb on + strand, within Pf6N2E2_5091 at 5873.897 kb on + strand, within Pf6N2E2_5091 at 5873.897 kb on + strand, within Pf6N2E2_5091 at 5873.913 kb on - strand, within Pf6N2E2_5091 at 5874.309 kb on - strand, within Pf6N2E2_5091 at 5874.309 kb on - strand, within Pf6N2E2_5091 at 5874.416 kb on + strand, within Pf6N2E2_5091 at 5874.446 kb on + strand, within Pf6N2E2_5091 at 5874.446 kb on + strand, within Pf6N2E2_5091 at 5874.447 kb on - strand, within Pf6N2E2_5091 at 5874.447 kb on - strand, within Pf6N2E2_5091 at 5874.447 kb on - strand, within Pf6N2E2_5091 at 5874.467 kb on + strand, within Pf6N2E2_5091 at 5874.467 kb on + strand, within Pf6N2E2_5091 at 5874.467 kb on + strand, within Pf6N2E2_5091 at 5874.467 kb on + strand, within Pf6N2E2_5091 at 5874.467 kb on + strand, within Pf6N2E2_5091 at 5874.467 kb on + strand, within Pf6N2E2_5091 at 5874.468 kb on - strand, within Pf6N2E2_5091 at 5874.743 kb on - strand, within Pf6N2E2_5091 at 5874.814 kb on - strand at 5874.814 kb on - strand at 5874.815 kb on + strand at 5874.815 kb on + strand at 5874.815 kb on + strand at 5874.815 kb on + strand at 5874.815 kb on + strand at 5874.815 kb on + strand at 5874.815 kb on + strand at 5874.815 kb on + strand at 5874.816 kb on - strand at 5874.972 kb on + strand at 5874.972 kb on + strand at 5874.973 kb on - strand at 5874.973 kb on - strand at 5874.981 kb on - strand at 5875.064 kb on - strand at 5875.064 kb on - strand at 5875.064 kb on - strand at 5875.064 kb on - strand at 5875.064 kb on - strand at 5875.079 kb on - strand at 5875.079 kb on - strand at 5875.124 kb on + strand, within Pf6N2E2_5092 at 5875.124 kb on + strand, within Pf6N2E2_5092 at 5875.125 kb on - strand, within Pf6N2E2_5092 at 5875.125 kb on - strand, within Pf6N2E2_5092 at 5875.125 kb on - strand, within Pf6N2E2_5092 at 5875.125 kb on - strand, within Pf6N2E2_5092 at 5875.125 kb on - strand, within Pf6N2E2_5092 at 5875.237 kb on + strand, within Pf6N2E2_5092 at 5875.237 kb on + strand, within Pf6N2E2_5092 at 5875.238 kb on - strand, within Pf6N2E2_5092 at 5875.238 kb on - strand, within Pf6N2E2_5092 at 5875.238 kb on - strand, within Pf6N2E2_5092 at 5875.238 kb on - strand, within Pf6N2E2_5092 at 5875.238 kb on - strand, within Pf6N2E2_5092 at 5875.328 kb on - strand, within Pf6N2E2_5092 at 5875.382 kb on + strand, within Pf6N2E2_5092 at 5875.383 kb on - strand, within Pf6N2E2_5092 at 5875.383 kb on - strand, within Pf6N2E2_5092 at 5875.512 kb on + strand at 5875.550 kb on + strand at 5875.550 kb on + strand at 5875.550 kb on + strand at 5875.550 kb on + strand at 5875.551 kb on - strand at 5875.551 kb on - strand at 5875.551 kb on - strand at 5875.551 kb on - strand at 5875.551 kb on - strand at 5875.554 kb on + strand at 5875.554 kb on + strand at 5875.554 kb on + strand at 5875.554 kb on + strand at 5875.554 kb on + strand at 5875.554 kb on + strand at 5875.554 kb on + strand at 5875.554 kb on + strand at 5875.554 kb on + strand at 5875.554 kb on + strand at 5875.554 kb on + strand at 5875.554 kb on + strand at 5875.555 kb on - strand at 5875.555 kb on - strand at 5875.555 kb on - strand at 5875.555 kb on - strand at 5875.555 kb on - strand at 5875.555 kb on - strand at 5875.555 kb on - strand at 5875.555 kb on - strand at 5875.555 kb on - strand at 5875.555 kb on - strand at 5875.565 kb on + strand at 5875.565 kb on + strand at 5875.565 kb on + strand at 5875.566 kb on - strand at 5875.566 kb on - strand at 5875.566 kb on - strand at 5875.566 kb on - strand at 5875.566 kb on - strand at 5875.566 kb on - strand at 5875.566 kb on - strand at 5875.597 kb on + strand at 5875.598 kb on - strand at 5875.646 kb on + strand at 5875.646 kb on + strand at 5875.738 kb on - strand at 5875.738 kb on - strand at 5875.773 kb on - strand at 5875.796 kb on - strand at 5875.796 kb on - strand at 5875.813 kb on + strand at 5875.813 kb on + strand at 5875.813 kb on + strand at 5875.813 kb on + strand at 5875.813 kb on + strand at 5875.814 kb on - strand at 5875.814 kb on - strand at 5875.814 kb on - strand at 5875.814 kb on - strand at 5875.814 kb on - strand at 5875.814 kb on - strand at 5875.814 kb on - strand at 5875.814 kb on - strand at 5875.814 kb on - strand at 5875.814 kb on - strand at 5875.814 kb on - strand at 5875.814 kb on - strand at 5875.908 kb on + strand at 5875.909 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 5,872,195 + +0.5 5,872,371 + +1.2 5,872,371 + -0.3 5,872,404 - +1.8 5,872,570 + +0.1 5,872,570 + +0.5 5,872,673 + +0.1 5,872,780 + +0.2 5,872,787 + -2.1 5,872,813 + -0.6 5,872,830 + -2.4 5,872,976 + +0.3 5,873,007 - +0.3 5,873,007 - -0.4 5,873,118 - +0.5 5,873,118 - -0.4 5,873,124 - +0.1 5,873,129 + +1.1 5,873,130 - -0.8 5,873,130 - +0.3 5,873,130 - +1.2 5,873,130 - +0.9 5,873,277 - +1.1 5,873,277 - +1.0 5,873,277 - +0.5 5,873,277 - -1.5 5,873,277 - -0.8 5,873,615 + Pf6N2E2_5091 0.27 +1.6 5,873,616 - Pf6N2E2_5091 0.27 +0.9 5,873,616 - Pf6N2E2_5091 0.27 -0.6 5,873,693 + Pf6N2E2_5091 0.31 +1.3 5,873,897 + Pf6N2E2_5091 0.42 -0.5 5,873,897 + Pf6N2E2_5091 0.42 +0.7 5,873,913 - Pf6N2E2_5091 0.43 +0.6 5,874,309 - Pf6N2E2_5091 0.64 +0.4 5,874,309 - Pf6N2E2_5091 0.64 +0.3 5,874,416 + Pf6N2E2_5091 0.70 +1.4 5,874,446 + Pf6N2E2_5091 0.72 +1.2 5,874,446 + Pf6N2E2_5091 0.72 +0.5 5,874,447 - Pf6N2E2_5091 0.72 +0.7 5,874,447 - Pf6N2E2_5091 0.72 -0.2 5,874,447 - Pf6N2E2_5091 0.72 -0.6 5,874,467 + Pf6N2E2_5091 0.73 +1.2 5,874,467 + Pf6N2E2_5091 0.73 +0.2 5,874,467 + Pf6N2E2_5091 0.73 +1.1 5,874,467 + Pf6N2E2_5091 0.73 +0.4 5,874,467 + Pf6N2E2_5091 0.73 +0.9 5,874,467 + Pf6N2E2_5091 0.73 +0.2 5,874,468 - Pf6N2E2_5091 0.73 -0.2 5,874,743 - Pf6N2E2_5091 0.88 +1.5 5,874,814 - +1.2 5,874,814 - +1.5 5,874,815 + -0.6 5,874,815 + -0.3 5,874,815 + -0.4 5,874,815 + +0.6 5,874,815 + +1.2 5,874,815 + +1.2 5,874,815 + -0.0 5,874,815 + +0.3 5,874,816 - +0.5 5,874,972 + -0.9 5,874,972 + +0.8 5,874,973 - +1.4 5,874,973 - +0.6 5,874,981 - -0.5 5,875,064 - -0.5 5,875,064 - -0.4 5,875,064 - -1.2 5,875,064 - +0.2 5,875,064 - +0.6 5,875,079 - -1.6 5,875,079 - +1.8 5,875,124 + Pf6N2E2_5092 0.13 +0.4 5,875,124 + Pf6N2E2_5092 0.13 +0.2 5,875,125 - Pf6N2E2_5092 0.13 -1.4 5,875,125 - Pf6N2E2_5092 0.13 -1.2 5,875,125 - Pf6N2E2_5092 0.13 +1.0 5,875,125 - Pf6N2E2_5092 0.13 -0.2 5,875,125 - Pf6N2E2_5092 0.13 -0.6 5,875,237 + Pf6N2E2_5092 0.36 +0.3 5,875,237 + Pf6N2E2_5092 0.36 -1.6 5,875,238 - Pf6N2E2_5092 0.36 +0.4 5,875,238 - Pf6N2E2_5092 0.36 +0.8 5,875,238 - Pf6N2E2_5092 0.36 -0.2 5,875,238 - Pf6N2E2_5092 0.36 -0.0 5,875,238 - Pf6N2E2_5092 0.36 +0.6 5,875,328 - Pf6N2E2_5092 0.54 +1.6 5,875,382 + Pf6N2E2_5092 0.65 +0.9 5,875,383 - Pf6N2E2_5092 0.66 -0.2 5,875,383 - Pf6N2E2_5092 0.66 -0.2 5,875,512 + -0.9 5,875,550 + +0.7 5,875,550 + -0.5 5,875,550 + +1.0 5,875,550 + +0.8 5,875,551 - -0.4 5,875,551 - -0.8 5,875,551 - +1.4 5,875,551 - +0.4 5,875,551 - -0.4 5,875,554 + +0.9 5,875,554 + +0.6 5,875,554 + +0.8 5,875,554 + +1.1 5,875,554 + -0.8 5,875,554 + +0.3 5,875,554 + +1.7 5,875,554 + +1.5 5,875,554 + +0.7 5,875,554 + +1.3 5,875,554 + +0.2 5,875,554 + +1.0 5,875,555 - +0.3 5,875,555 - -1.6 5,875,555 - +0.5 5,875,555 - -1.8 5,875,555 - -0.5 5,875,555 - -0.2 5,875,555 - +0.7 5,875,555 - -0.5 5,875,555 - -2.2 5,875,555 - +0.2 5,875,565 + +1.0 5,875,565 + +0.1 5,875,565 + +0.7 5,875,566 - +1.4 5,875,566 - +1.1 5,875,566 - -1.3 5,875,566 - +2.0 5,875,566 - +0.1 5,875,566 - +0.0 5,875,566 - -0.2 5,875,597 + +0.8 5,875,598 - -0.5 5,875,646 + +0.2 5,875,646 + -0.5 5,875,738 - +0.4 5,875,738 - -3.7 5,875,773 - +0.3 5,875,796 - -0.0 5,875,796 - -0.2 5,875,813 + -1.0 5,875,813 + -1.5 5,875,813 + +0.2 5,875,813 + -0.2 5,875,813 + -0.5 5,875,814 - +0.6 5,875,814 - +0.2 5,875,814 - +0.6 5,875,814 - -0.3 5,875,814 - +0.2 5,875,814 - +0.6 5,875,814 - -1.0 5,875,814 - +0.0 5,875,814 - -0.7 5,875,814 - +1.5 5,875,814 - +0.0 5,875,814 - +0.2 5,875,908 + -1.7 5,875,909 - -0.5
Or see this region's nucleotide sequence